PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_18599_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 228aa    MW: 25823.7 Da    PI: 8.8141
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_18599_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.32.8e-165099255
                         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                +y GVr+++ +grWvAeI+  s   ++ r +lg+f+ +eeAa a+++a+  l+g
  Cotton_A_18599_BGI-A2_v1.0 50 RYLGVRQRP-SGRWVAEIKNSS---QKLRLWLGTFDKPEEAALAYDNAAMVLRG 99
                                689******.7******98832...46**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-115099IPR001471AP2/ERF domain
CDDcd000182.51E-2950108No hitNo description
Gene3DG3DSA:3.30.730.104.4E-2750107IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-1950108IPR016177DNA-binding domain
PROSITE profilePS5103219.78350107IPR001471AP2/ERF domain
SMARTSM003802.5E-3150113IPR001471AP2/ERF domain
PRINTSPR003675.6E-75162IPR001471AP2/ERF domain
PRINTSPR003675.6E-77389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MDSSRLTMVS QQDQSPNKNQ TSIEPHEAQT MAENSEKRSN KKVISNGRRR YLGVRQRPSG  60
RWVAEIKNSS QKLRLWLGTF DKPEEAALAY DNAAMVLRGK NAKTNFQYEG NLNLIGKVNI  120
NPRVYQLLQL TIMKNHARSA LRSINGKRMD PVDVDGFDTI VEETIFCDDN HHHHDHHDHH  180
DHDEGGNNNN NKLCKVSLGN SKVYSSVVVA PSFCSSSIDQ QGQKENNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-14501131478Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6168571e-144JX616857.1 Gossypium hirsutum clone NBRI_GE61800 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017633602.11e-172PREDICTED: ethylene-responsive transcription factor RAP2-2-like
TrEMBLA0A1U8LIN51e-149A0A1U8LIN5_GOSHI; ethylene-responsive transcription factor ERF091-like
STRINGGorai.001G064900.11e-138(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17770810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-24related to AP2 11