PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_18579_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 769aa    MW: 86020.1 Da    PI: 6.8862
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_18579_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3802.9e-1163967661373
                        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                                 l++lL+ cA+a++s+d+  a++l++++++++sp+gd  qRla+yf+ AL+arla++++++y +l +++ s    ++ l+a+++
  Cotton_A_18579_BGI-A2_v1.0 396 LRTLLILCAQAITSNDNVTAKELIKQIRQHSSPYGDGSQRLAHYFVDALEARLAGTGTQIYTSLVAKRMS---AADMLKAYQV 475
                                 5789************************************************************999998...9********* PP

                        GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetger 164
                                 +  v+P++k+  + aN+ I +a+e+++++HiiDf+i +G++WpaL++ La+Rp+gpp+lRiTg++ p++g   +e+++etg+r
  Cotton_A_18579_BGI-A2_v1.0 476 YISVCPFVKVPIIFANNYISKAAEKATKLHIIDFGIFYGFHWPALIHCLANRPGGPPKLRITGIEFPHPGfrPAEAVQETGRR 558
                                 ********************************************************************9999*********** PP

                        GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                                 L k++e+ +vpfe+++ +a+++e++++e+L+++++E++aVn+  +  +llde+v l+s+rd+vLkl+++++P+v+v++  + +
  Cotton_A_18579_BGI-A2_v1.0 559 LVKYCERYNVPFEYHA-IAQKWETIRTEDLKINSDEVIAVNCLCRFRNLLDETVVLNSPRDTVLKLIRKINPDVFVHSVVNGS 640
                                 ****************.7***************************************************************** PP

                        GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
                                 +n++ F++rf eal ++salfd+ e+++++e++ r+++E+++ grei+n+vaceg+er+er e++++W+ r ++aGF ++pl+
  Cotton_A_18579_BGI-A2_v1.0 641 YNAPFFVTRFREALFHFSALFDMCETNVSHEDNMRSMLEQKFYGREIMNIVACEGTERVERPESYKQWQVRNMRAGFVQLPLN 723
                                 *********************************************************************************** PP

                        GRAS 331 ekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                  + +k +k  ++  +   ++v+ +  ++++gWk+r +++ SaW
  Cotton_A_18579_BGI-A2_v1.0 724 PELMKRVKERVKARYHSDFMVDVDGRWMLQGWKGRIIYASSAW 766
                                 ************999777************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.292370747IPR005202Transcription factor GRAS
PfamPF035141.0E-113396766IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    Send to blast
MGSHLTGFPR TVNGFKISDG YLLPNPNVYP KFEISDGIGS NDQSLDFSSL GVPFLPSLGL  60
GDSSFASILS MGSMGKEGDT FSPTDDTDVS DTVLKYISQV LLEEEMEEKP CMFHDSLALQ  120
AAEKSLYEVL GESYPPRDQA PVCVDPSVES PDNCSFGTSS DHSIHSGSSS CTSYTIESQW  180
NGDFSENNNR PSLLQTSIPE NFVFQSTVDP GSRFSSHSQN GSANNGNGFM GSPASEFLVP  240
NYFSQSELAL HFKRGFEEAS KFLPKANQLN VGFKSNALTS ELKQKASNTV VKVESDRKEC  300
SPPRLIRKKS HEREDEDLEE RNNKQSAVLG DESELSDMFD KVLICARRRG QSSSSTADET  360
LPNGPSKTLL PNEQTNGSNS GKARGKKQGK KKVVDLRTLL ILCAQAITSN DNVTAKELIK  420
QIRQHSSPYG DGSQRLAHYF VDALEARLAG TGTQIYTSLV AKRMSAADML KAYQVYISVC  480
PFVKVPIIFA NNYISKAAEK ATKLHIIDFG IFYGFHWPAL IHCLANRPGG PPKLRITGIE  540
FPHPGFRPAE AVQETGRRLV KYCERYNVPF EYHAIAQKWE TIRTEDLKIN SDEVIAVNCL  600
CRFRNLLDET VVLNSPRDTV LKLIRKINPD VFVHSVVNGS YNAPFFVTRF REALFHFSAL  660
FDMCETNVSH EDNMRSMLEQ KFYGREIMNI VACEGTERVE RPESYKQWQV RNMRAGFVQL  720
PLNPELMKRV KERVKARYHS DFMVDVDGRW MLQGWKGRII YASSAWIPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-5540376826380Protein SCARECROW
5b3h_A2e-5540376825379Protein SCARECROW
5b3h_D2e-5540376825379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017638602.10.0PREDICTED: scarecrow-like protein 33
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2P5WNP70.0A0A2P5WNP7_GOSBA; Uncharacterized protein
STRINGGorai.003G130600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]