PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_18479_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TALE | ||||||||
Protein Properties | Length: 289aa MW: 32991.9 Da PI: 5.2553 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.5 | 5.3e-09 | 233 | 265 | 23 | 55 |
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++ee+ +L++ +gL+++q+ +WF N+R ++ Cotton_A_18479_BGI-A2_v1.0 233 PYPTEEEKLKLSEITGLDQKQINNWFINQRKRH 265 8*****************************885 PP | |||||||
2 | ELK | 35.8 | 1.7e-12 | 185 | 206 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ++K +L+rKYsgyL++L++EF+ Cotton_A_18479_BGI-A2_v1.0 185 DIKGMLMRKYSGYLCNLRKEFL 206 58*******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 4.9E-21 | 55 | 99 | IPR005540 | KNOX1 |
Pfam | PF03790 | 4.3E-20 | 57 | 98 | IPR005540 | KNOX1 |
SMART | SM01256 | 8.0E-26 | 103 | 154 | IPR005541 | KNOX2 |
Pfam | PF03791 | 2.3E-25 | 106 | 153 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 10.057 | 185 | 205 | IPR005539 | ELK domain |
Pfam | PF03789 | 4.8E-8 | 185 | 206 | IPR005539 | ELK domain |
SMART | SM01188 | 2.9E-5 | 185 | 206 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.661 | 205 | 268 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.75E-18 | 207 | 275 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.8E-12 | 207 | 272 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.4E-27 | 210 | 270 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 6.01E-13 | 217 | 269 | No hit | No description |
Pfam | PF05920 | 1.1E-16 | 225 | 264 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 243 | 266 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MEDLDRLDDR TVSSSNDSAR VNNNLAATVT TTGFHSPVHH LLQFDHQAAD TDMPDVIKTQ 60 IANHPRYPDL VSAHIECRKV GAPPELASLL EEIGRENHHP ISGCSEIGAD PELDDFMESY 120 CDILHKYKEE LSKPFDEATT FLSNIESQLS NLCKGALTKT LDYGSDEACE SSGWEAEAYE 180 SGQEDIKGML MRKYSGYLCN LRKEFLKKSK KGKLPKDARM VLLHWWNNHY RWPYPTEEEK 240 LKLSEITGLD QKQINNWFIN QRKRHWKPSE DMKFALMEDF AGNINGGPT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX583168 | 9e-65 | JX583168.1 Gossypium hirsutum clone NBRI_GE16149 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017625687.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 1 | ||||
Swissprot | Q9FP29 | 2e-91 | KNOS1_ORYSJ; Homeobox protein knotted-1-like 1 | ||||
TrEMBL | A0A1U8I8F0 | 0.0 | A0A1U8I8F0_GOSHI; homeobox protein knotted-1-like 1 | ||||
STRING | Gorai.004G236400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM835 | 27 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.1 | 2e-80 | KNOTTED1-like homeobox gene 6 |
Publications ? help Back to Top | |||
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