PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_18442_BGI-A2_v1.0

Common Name

F383_04639

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 357aa MW: 40585.6 Da PI: 8.203

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_18442_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.3	2.6e-11	73	113	3	40
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLea 40 +k +rr+++NReAAr+sR+RKka++++Le k ++Le+ Cotton_A_18442_BGI-A2_v1.0 73 TDKIQRRLAQNREAARKSRLRKKAYVQQLESsrlKLAQLEQ 113 7899**************************83333444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-7	71	134	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.163	73	117	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.8E-8	73	111	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.63E-7	75	116	No hit	No description
Gene3D	G3DSA:1.20.5.170	9.7E-8	76	118	No hit	No description
PROSITE pattern	PS00036	0	78	93	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	6.3E-29	161	236	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MSSLSTELTR RMAIYEQFHQ INKWGDTFNG EDSPKTGSST VLQVDVRLEN KAEYISSEKT 60 EPSRSDQETN KPTDKIQRRL AQNREAARKS RLRKKAYVQQ LESSRLKLAQ LEQELERARQ 120 QGLYISSAST GYFGLSAAAN AGITAFEMEY GNWVEEQNKK ICELRSALQA HITDIELRIL 180 VENSLNHYCN LFHIKADAAK ADVFYLISGI WRTTAERFFH WIGGFRPSEL LNVLMSQIEP 240 LTDQQQLEVY NLQQSSQQAE DALSQGIDRL QQNLAESVAT DLSSGNYKAQ LAAAIDKLQA 300 LEGFVKQADH LRQQTLQQMA RILTTRQAAR GLLALGEYFH RLRALSSLWS ARPREPS

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MSSLSTELTR RMAIYEQFHQ INKWGDTFNG EDSPKTGSST VLQVDVRLEN KAEYISSEKT  60
EPSRSDQETN KPTDKIQRRL AQNREAARKS RLRKKAYVQQ LESSRLKLAQ LEQELERARQ  120
QGLYISSAST GYFGLSAAAN AGITAFEMEY GNWVEEQNKK ICELRSALQA HITDIELRIL  180
VENSLNHYCN LFHIKADAAK ADVFYLISGI WRTTAERFFH WIGGFRPSEL LNVLMSQIEP  240
LTDQQQLEVY NLQQSSQQAE DALSQGIDRL QQNLAESVAT DLSSGNYKAQ LAAAIDKLQA  300
LEGFVKQADH LRQQTLQQMA RILTTRQAAR GLLALGEYFH RLRALSSLWS ARPREPS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00247	DAP	Transfer from AT1G77920	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017643299.1	0.0	PREDICTED: transcription factor TGA7-like
Refseq	XP_017643300.1	0.0	PREDICTED: transcription factor TGA7-like
Swissprot	Q93ZE2	1e-164	TGA7_ARATH; Transcription factor TGA7
TrEMBL	A0A0B0Q0Z8	0.0	A0A0B0Q0Z8_GOSAR; Transcription factor TGA7-like protein
STRING	Gorai.010G045700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3061	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	1e-154	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]