PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_18426_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 357aa    MW: 41556.3 Da    PI: 6.584
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_18426_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.91.1e-5471351129
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratks 80 
                                 +ppGfrFhPtdeelv++yL+kkv++k  +l +vik+vd+yk+ePwdL++  ++ + +++ewyfFs++dkky+tg+r+nratk 
  Cotton_A_18426_BGI-A2_v1.0   7 VPPGFRFHPTDEELVDYYLRKKVASKI-DL-DVIKDVDLYKIEPWDLQElcRIGTeDQNEWYFFSHKDKKYPTGTRTNRATKV 87 
                                 69*********************9876.77.89**************954555552555************************ PP

                         NAM  81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                 g+Wkatg+dk+++s +++l+g++ktLvfykgrap+g+k+dW+mheyrle
  Cotton_A_18426_BGI-A2_v1.0  88 GFWKATGRDKPIYS-RQSLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 135
                                 **************.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-575155IPR003441NAC domain
PROSITE profilePS5100559.6217155IPR003441NAC domain
PfamPF023656.8E-298134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MNSFSHVPPG FRFHPTDEEL VDYYLRKKVA SKIDLDVIKD VDLYKIEPWD LQELCRIGTE  60
DQNEWYFFSH KDKKYPTGTR TNRATKVGFW KATGRDKPIY SRQSLIGMRK TLVFYKGRAP  120
NGQKSDWIMH EYRLETIENG TPQEEGWVVC RVFKKRMTTV RKMGEYESSC WYDGQVSFMQ  180
ELDSPRRIPQ PYASYYHRYP CKPEPKLQYN SPHDPTFQLP QLENPNVQQY SAASLSCNSV  240
VPDGNYDGKT GSTLQSSTLT QEEHMHPTHQ QSLKSFYDST TEQAVDQVTD WRVLDKFVAS  300
QLSHEEASKE NNYCNADTSF YVAEQMNLAS NESKRPEIAH QEYASTSTSS CQIDLWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-50615614169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472110.0KC847211.1 Gossypium hirsutum NAC domain protein NAC34 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017625515.10.0PREDICTED: NAC domain-containing protein 7-like isoform X2
SwissprotQ9FWX21e-149NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A2P5YPL80.0A0A2P5YPL8_GOSBA; Uncharacterized protein
STRINGGorai.004G201100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21112678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-146NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]