PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_18397_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Nin-like
Protein Properties Length: 73aa    MW: 8207.49 Da    PI: 10.306
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_18397_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK29.91.1e-092251942
                      RWP-RK 19 kdAAkeLgvclTvLKriCRqyGIk 42
                                ++AAk+++ ++Tv+K+iCR+yGI+
  Cotton_A_18397_BGI-A2_v1.0  2 EKAAKKMEFSATVVKKICRKYGIQ 25
                                79*********************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF020425.6E-7125IPR003035RWP-RK domain
Gene3DG3DSA:1.10.10.601.2E-41162IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
MEKAAKKMEF SATVVKKICR KYGIQSMEKK ISNWVESLSS NDPKERARAK KEIKNLQGEI  60
AKFGEGSSKL GDD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475904.11e-37PREDICTED: uncharacterized protein LOC105792067
RefseqXP_016716198.16e-40PREDICTED: protein RKD1-like
TrEMBLA0A0D2R7U72e-36A0A0D2R7U7_GOSRA; Uncharacterized protein
TrEMBLA0A1U8LRZ51e-38A0A1U8LRZ5_GOSHI; protein RKD1-like
TrEMBLA0A2P5SMI51e-35A0A2P5SMI5_GOSBA; Uncharacterized protein
STRINGGorai.004G198100.14e-37(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40762342