PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_18382_BGI-A2_v1.0 | ||||||||
Common Name | F383_20839 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 198aa MW: 23095.1 Da PI: 6.3693 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 63.4 | 4.5e-20 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+++++ +G ++WktIa + g++R++k+c++rw++yl Cotton_A_18382_BGI-A2_v1.0 15 KGSWTAEEDRRLAKYIEIHGAKRWKTIAIKSGLNRCGKSCRLRWLNYL 62 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.6 | 5.1e-17 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + eE++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l Cotton_A_18382_BGI-A2_v1.0 68 RGNISDEEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 113 7899******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.114 | 10 | 62 | IPR017930 | Myb domain |
SMART | SM00717 | 4.6E-16 | 14 | 64 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.65E-29 | 14 | 109 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.6E-17 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-24 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.22E-11 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 26.767 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-16 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-15 | 68 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.4E-26 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.04E-10 | 72 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0048629 | Biological Process | trichome patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MAPKKDGVSK RVFNKGSWTA EEDRRLAKYI EIHGAKRWKT IAIKSGLNRC GKSCRLRWLN 60 YLRPNIKRGN ISDEEEDLII RLHKLLGNRW SLIAGRLPGR TDNEIKNYWN SHLSKKIINH 120 DVRTEQTSSS EQIVPHKAWE TVQMEEEEVV KGSDEIENSE FSIDVDEFFD FTTEGCFSLD 180 WVNKFLELDD QQDPLAMV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-30 | 13 | 117 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC. {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:11585796, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16207757}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transcriptional activation correlates with reduced histone acetylation on H3 and H4 mediated by HDA18 in N cells. Repressed by CPC in hair cells (H position). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:16176989}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY626160 | 0.0 | AY626160.1 Gossypium arboreum myb family transcription factor 2/fiber factor 1 mRNA, complete cds. | |||
GenBank | JQ868555 | 0.0 | JQ868555.1 Gossypium arboreum isolate A2 MYB2 mRNA, complete cds. | |||
GenBank | JQ868556 | 0.0 | JQ868556.1 Gossypium hirsutum isolate TM1 note A genome MYB2 mRNA, complete cds. | |||
GenBank | JQ868557 | 0.0 | JQ868557.1 Gossypium hirsutum isolate N1 note A genome MYB2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016721896.1 | 1e-146 | PREDICTED: transcription factor MYB114-like | ||||
Refseq | XP_017625244.1 | 1e-146 | PREDICTED: transcription factor MYB114-like | ||||
Swissprot | Q9SEI0 | 5e-53 | WER_ARATH; Transcription factor WER | ||||
TrEMBL | Q52MQ3 | 1e-144 | Q52MQ3_GOSHI; MYB2 | ||||
TrEMBL | Q66Q66 | 1e-144 | Q66Q66_GOSAR; MYB2 | ||||
STRING | Gorai.004G196800.1 | 1e-140 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 2e-55 | myb domain protein 66 |