PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_18381_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 212aa    MW: 23571.6 Da    PI: 6.6928
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_18381_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.7e-184493255
                         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                 y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a++ ++g
  Cotton_A_18381_BGI-A2_v1.0 44 TYRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALTIKG 93
                                69****998.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.43344101IPR001471AP2/ERF domain
SMARTSM003805.4E-3744107IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-2244102IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-3244102IPR001471AP2/ERF domain
PfamPF008472.1E-124493IPR001471AP2/ERF domain
CDDcd000188.92E-3345103No hitNo description
PRINTSPR003677.9E-114556IPR001471AP2/ERF domain
PRINTSPR003677.9E-116783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MEVPLDVESK TPFPSSSSSP PPGFKSRKLK FGSESKGKDG KHPTYRGVRM RQWGKWVSEI  60
REPRKKSRIW LGTFPTAEMA ARAHDVAALT IKGNSAYLNF PELAHQLPRP VSASPKDIQA  120
AAAKAATLTY TKSHDVEDDP MLPRSPTTTA TSQEESHLIN DDEAFIDLPD LLLDMNLQID  180
KFWSSVSWKL DDAVETGFGG EEPRASNFIF LQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1835101572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00292DAPTransfer from AT2G35700Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017625721.11e-156PREDICTED: ethylene-responsive transcription factor ERF039-like
SwissprotQ9ZQP32e-55ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLA0A1U8M5171e-151A0A1U8M517_GOSHI; ethylene-responsive transcription factor ERF039-like
STRINGGorai.004G196700.11e-131(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24922374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.12e-57ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]