PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_18125_BGI-A2_v1.0
Common NameF383_17021
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 356aa    MW: 40110.2 Da    PI: 8.5358
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_18125_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.23.2e-53101441128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                                 lppGfrFhPtdeel+ +yLkkk++++++++ ++i++vdiyk++PwdLp k++ +ekewyfFs+rd+ky++g r+nra++sgyW
  Cotton_A_18125_BGI-A2_v1.0  10 LPPGFRFHPTDEELILHYLKKKITSSPFPV-SIIADVDIYKFDPWDLPGKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYW 91 
                                 79****************************.89***************888889***************************** PP

                         NAM  84 katgkdkevlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 katg+dk ++++         +e++g+kk Lvfykgr pkg kt+W+mheyrl
  Cotton_A_18125_BGI-A2_v1.0  92 KATGTDKVIVTSsmadrrgeVQENIGVKKALVFYKGRPPKGMKTNWIMHEYRL 144
                                 **********98787776554555***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-654177IPR003441NAC domain
PROSITE profilePS5100561.63710177IPR003441NAC domain
PfamPF023655.3E-2811144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MNMKHPQSSL PPGFRFHPTD EELILHYLKK KITSSPFPVS IIADVDIYKF DPWDLPGKAA  60
FGEKEWYFFS PRDRKYPNGA RPNRAAASGY WKATGTDKVI VTSSMADRRG EVQENIGVKK  120
ALVFYKGRPP KGMKTNWIMH EYRLADNPNS NFNNRPLKSK DSSMRLDDWV LCRIYKKSNA  180
LSSTTAIGAA TSDQDLEEEE AEQFIKDALL PAAIKSPPTT NALLPQKSCS FSNLLDATDY  240
SMLSSFLADN QCNGSGYDPT SFTFEQPLVN NYTIGNNSSS MMMQKLPQLS PSIPNMENKL  300
KRQYSSIDED HPSKKLNSSC SYSNSSTQSD MTHYTFLNQS LFNQSLLLSP HIQFQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-73718014168NO APICAL MERISTEM PROTEIN
1ut4_B5e-73718014168NO APICAL MERISTEM PROTEIN
1ut7_A5e-73718014168NO APICAL MERISTEM PROTEIN
1ut7_B5e-73718014168NO APICAL MERISTEM PROTEIN
3swm_A5e-73718017171NAC domain-containing protein 19
3swm_B5e-73718017171NAC domain-containing protein 19
3swm_C5e-73718017171NAC domain-containing protein 19
3swm_D5e-73718017171NAC domain-containing protein 19
3swp_A5e-73718017171NAC domain-containing protein 19
3swp_B5e-73718017171NAC domain-containing protein 19
3swp_C5e-73718017171NAC domain-containing protein 19
3swp_D5e-73718017171NAC domain-containing protein 19
4dul_A5e-73718014168NAC domain-containing protein 19
4dul_B5e-73718014168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00333DAPTransfer from AT3G04070Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1106430.0KC110643.1 Gossypium hirsutum NAC protein 8 (NAC8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017628145.10.0PREDICTED: NAC transcription factor 29-like
SwissprotQ84TD61e-121NAC47_ARATH; NAC transcription factor 47
TrEMBLA0A0B0NJB60.0A0A0B0NJB6_GOSAR; NAC domain-containing 29-like protein
STRINGGorai.007G267900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77232540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.11e-113NAC domain containing protein 47
Publications ? help Back to Top
  1. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]