PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_18123_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 348aa MW: 39480.4 Da PI: 7.494

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_18123_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	184.6	2.3e-57	16	143	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppGfrFhPtdee++++yL++kv ++++++ ++i evd++k+ePwdLpkk+k +ek+wyfF++rd+ky+tg r+nrat++gyW Cotton_A_18123_BGI-A2_v1.0 16 LPPGFRFHPTDEEIITHYLTEKVMNSNFSA-SAIGEVDLNKCEPWDLPKKAKMGEKQWYFFCQRDRKYPTGMRTNRATEAGYW 97 79************************99.88***********99999************************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 katgkdke+++ kg lvg+kktLvfykgrapkgek++Wvmheyrle Cotton_A_18123_BGI-A2_v1.0 98 KATGKDKEIFKGKGCLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 143 *******9******************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-63	12	167	IPR003441	NAC domain
PROSITE profile	PS51005	59.999	16	167	IPR003441	NAC domain
Pfam	PF02365	7.8E-30	17	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MEEAIVVNKG DELIDLPPGF RFHPTDEEII THYLTEKVMN SNFSASAIGE VDLNKCEPWD 60 LPKKAKMGEK QWYFFCQRDR KYPTGMRTNR ATEAGYWKAT GKDKEIFKGK GCLVGMKKTL 120 VFYKGRAPKG EKSNWVMHEY RLEGKFSYYN LPKGAKDEWV VCRVFDKNNT GTKKSPIPDH 180 HQLLRMNSYG DDFMDYASLP PLMDPTYNSN KPGSSCTFMD GGDNEFKAAI NNQTFLQVPP 240 NHPYGSSNIF NPQIPIQNPV FFHQATPTST YLHQGRTTAG TGLAGNDPAN RRCKVEQFSS 300 NQSMVSLSQD TGLSTEINNN EISSVVSKND MEFGISKSFE DLRCLWDY

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MEEAIVVNKG DELIDLPPGF RFHPTDEEII THYLTEKVMN SNFSASAIGE VDLNKCEPWD  60
LPKKAKMGEK QWYFFCQRDR KYPTGMRTNR ATEAGYWKAT GKDKEIFKGK GCLVGMKKTL  120
VFYKGRAPKG EKSNWVMHEY RLEGKFSYYN LPKGAKDEWV VCRVFDKNNT GTKKSPIPDH  180
HQLLRMNSYG DDFMDYASLP PLMDPTYNSN KPGSSCTFMD GGDNEFKAAI NNQTFLQVPP  240
NHPYGSSNIF NPQIPIQNPV FFHQATPTST YLHQGRTTAG TGLAGNDPAN RRCKVEQFSS  300
NQSMVSLSQD TGLSTEINNN EISSVVSKND MEFGISKSFE DLRCLWDY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-54	14	173	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-54	14	173	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-54	14	173	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-54	14	173	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	5e-54	14	173	18	174	NAC domain-containing protein 19
3swm_B	5e-54	14	173	18	174	NAC domain-containing protein 19
3swm_C	5e-54	14	173	18	174	NAC domain-containing protein 19
3swm_D	5e-54	14	173	18	174	NAC domain-containing protein 19
3swp_A	5e-54	14	173	18	174	NAC domain-containing protein 19
3swp_B	5e-54	14	173	18	174	NAC domain-containing protein 19
3swp_C	5e-54	14	173	18	174	NAC domain-containing protein 19
3swp_D	5e-54	14	173	18	174	NAC domain-containing protein 19
4dul_A	5e-54	14	173	15	171	NAC domain-containing protein 19
4dul_B	5e-54	14	173	15	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00518	DAP	Transfer from AT5G18270	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ914139	0.0	JQ914139.1 Gossypium hirsutum NAC domain protein 8 (NAC8) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016672976.1	0.0	PREDICTED: NAC domain-containing protein 92-like
Refseq	XP_017628334.1	0.0	PREDICTED: NAC domain-containing protein 92-like
Swissprot	Q9FK44	1e-120	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A1U8I422	0.0	A0A1U8I422_GOSHI; NAC domain-containing protein 92-like
STRING	Gorai.007G267700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2269	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.1	1e-123	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]