PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_18053_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 261aa    MW: 29743.4 Da    PI: 8.9973
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_18053_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-2093141355
                         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                 y+G+r+++ +g+W+AeIrdp     +  r++lg++ taeeAa+a+++a+k+++g
  Cotton_A_18053_BGI-A2_v1.0  93 YRGIRQRP-WGKWAAEIRDPQ----KgVRVWLGTHNTAEEAARAYDEAAKRIRG 141
                                 9*******.**********94....35************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.32792149IPR001471AP2/ERF domain
SMARTSM003801.7E-3692155IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-2292150IPR016177DNA-binding domain
PfamPF008473.0E-1493141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-3293150IPR001471AP2/ERF domain
PRINTSPR003677.1E-1193104IPR001471AP2/ERF domain
CDDcd000189.66E-3493151No hitNo description
PRINTSPR003677.1E-11115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MCGGAIISDF VAVKHDPKLT GDDLWSEIDI FSDLLGFDNN GKSFVNHQFH NNNKKLINPK  60
DNQLNKERSE TIQKTSRVTK NVEKTQRTRK NFYRGIRQRP WGKWAAEIRD PQKGVRVWLG  120
THNTAEEAAR AYDEAAKRIR GDKAKLNFPQ TPTKNQAASP ALTQLPPAKK RCIVPELTQP  180
SFQTDSPPYP MGLGYGRSED YKPIEVVESE LELKEQIWSL ESFLGLETNH ETMTQLSGNG  240
GTDSLELWTL DDLVTQYKQR R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2293149360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9625720.0AY962572.1 Gossypium hirsutum cultivar Xinhai14 putative ethylene responsive element binding protein 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017609779.10.0PREDICTED: ethylene-responsive transcription factor RAP2-3-like
TrEMBLQ56E940.0Q56E94_GOSHI; Putative ethylene responsive element binding protein 3
STRINGGorai.006G260300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.11e-53ethylene-responsive element binding protein