PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_17603_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 454aa    MW: 50577.9 Da    PI: 7.5009
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_17603_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.000998097219
                                EETTTTEEESSHHHHHHH CS
                     zf-C2H2  2 kCpdCgksFsrksnLkrH 19
                                +C++Cg+ Fs++ ++  H
  Cotton_A_17603_BGI-A2_v1.0 80 VCENCGEEFSSWKSFLEH 97
                                6**************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003554.8931IPR015880Zinc finger, C2H2-like
PfamPF139120.00451031IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SMARTSM003552707999IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.52E-5205228No hitNo description
PfamPF139121.3E-9206230IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.076206233IPR007087Zinc finger, C2H2
SMARTSM003550.13206228IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280208228IPR007087Zinc finger, C2H2
SuperFamilySSF576671.52E-5286313No hitNo description
PfamPF139125.1E-13290314IPR007087Zinc finger, C2H2
SMARTSM003550.44291313IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.369291313IPR007087Zinc finger, C2H2
PROSITE patternPS000280293313IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MDQRSSYKHF CRICKKGFGC GRALGGHMRA HGIGDESWSI EDDDVVSDWE VEKLGGDSPL  60
NNKRMYSLRT NPNRLKSCRV CENCGEEFSS WKSFLEHGKC GYDAAESLVS SPGSGGGWSK  120
RKRSMRAEMG HFNSEEEELA NCLMMLSNAT VLREVEVDIE AEAEESCASA SKEDEMILKR  180
KNNTMNFIAP IACRVPMDHN KPKGLFECKA CKKVFNSHQA LGGHRASHKK VKGCFAARLD  240
HFDKTQQVDE DHDVITHEEL LPTKLTSHIQ LDQGTSTPFA ASTSKKKPKV HECSICHRVF  300
SSGQALGGHK RCHWVTSNSP DTSSLTKFHR FQDQTAHIRQ KPKLNIDQSL DLKLDLNLPA  360
TTDLDLVRRN HVNPYLQPFT GIDPKEKTTI NNQSQLQVDP IDCKKNDFNS SCLQNADDEA  420
DSKVKLAKLC ELKGINASGG SSSPWLQVGI SSDP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017613610.10.0PREDICTED: zinc finger protein ZAT4-like, partial
TrEMBLA0A1U8LCZ10.0A0A1U8LCZ1_GOSHI; zinc finger protein ZAT9-like
STRINGGorai.004G039900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13535616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.13e-27C2H2-like zinc finger protein