PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_17577_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HSF | ||||||||
Protein Properties | Length: 394aa MW: 45083.3 Da PI: 5.8587 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.4 | 1.5e-35 | 14 | 104 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 Fl+k+ye+++d+ +++l+swse+g sfvv+++ +f++++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++ weF+++ Cotton_A_17577_BGI-A2_v1.0 14 FLTKTYEMVDDPVTDSLVSWSETGYSFVVWNPPDFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDQ---------WEFANE 87 9****************************************************************999.........****** PP XXXXXXXXXXXXXXXXX CS HSF_DNA-bind 85 sFkkgkkellekikrkk 101 +F +g+k+ll++i r+k Cotton_A_17577_BGI-A2_v1.0 88 EFIRGQKHLLKNIYRRK 104 ***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 7.0E-39 | 8 | 98 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.5E-35 | 10 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.1E-63 | 10 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.2E-31 | 14 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.3E-21 | 14 | 37 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.3E-21 | 52 | 64 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 53 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.3E-21 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MEGSQGSCNG PPPFLTKTYE MVDDPVTDSL VSWSETGYSF VVWNPPDFSR DLLPRYFKHN 60 NFSSFVRQLN TYGFRKIDPD QWEFANEEFI RGQKHLLKNI YRRKPIHSHS LNRQGSSSVP 120 LTEKEKKEFE QVIKMLSDDK NRLQLQLQGH QKENEEYRCQ VRLLSERFRN LEDRQRRVMV 180 SLARIIDKPH VLSQFHGKKR KLLNSNDFND ECNIQDLHRL ASLNANMGLD LKQIEELESS 240 IRCWETLFLE IGETIGEEVR DFGTSLRPSP VVVTEIQTSS GDYDMDGELY SPSSHHCSPY 300 STDINSSPEL VAPAYHPIHT PSFHHVVNLN PKPPGIGLNS QHAGPLETDQ ASKNQAEAVA 360 TGYTVPGSVN DGFWERFLTE VPDTSSYAQE IQSV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 5e-26 | 3 | 103 | 19 | 129 | Heat shock factor protein 1 |
5d5v_B | 5e-26 | 3 | 103 | 19 | 129 | Heat shock factor protein 1 |
5d5v_D | 5e-26 | 3 | 103 | 19 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR067418 | 0.0 | KR067418.1 Gossypium hirsutum HSF37 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017613139.1 | 0.0 | PREDICTED: heat stress transcription factor A-4b-like | ||||
TrEMBL | A0A1U8PJ66 | 0.0 | A0A1U8PJ66_GOSHI; heat stress transcription factor A-4b-like | ||||
STRING | Gorai.012G044200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16734 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45710.1 | 5e-66 | HSF family protein |