PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_17366_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 302aa    MW: 32475.4 Da    PI: 5.7157
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_17366_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.25e-192373256
                         AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                                ++ GVr+++ +grWvAeI+d      ++ r +lg+f+taeeAa+a++ a+++l+g+
  Cotton_A_17366_BGI-A2_v1.0 23 RFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEEAARAYDDAARALRGA 73
                                689******.7*********....4456*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.6E-292380IPR001471AP2/ERF domain
CDDcd000182.97E-212380No hitNo description
PfamPF008472.7E-132372IPR001471AP2/ERF domain
SMARTSM003802.6E-342386IPR001471AP2/ERF domain
PROSITE profilePS5103220.6792380IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-202480IPR016177DNA-binding domain
PRINTSPR003674.8E-82435IPR001471AP2/ERF domain
PRINTSPR003674.8E-84662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MSVPIRADVL GGKKKSSSRG HHRFVGVRQR PSGRWVAEIK DSLQKVRLWL GTFDTAEEAA  60
RAYDDAARAL RGANARTNFE LAGPQLASSS STNRFSFDKL QPFSFEEACG KGGSDDGDGF  120
IGALKAKLLD GKGLKVLSLA NPAVVPPPQR IGNMNLVQGP TSKPDGEVAV GHIEAQWHQP  180
VQSQTPSMTS KIWSNEPSFE AATWGAQMNQ VPPNGLFDIS TLTAATSTWP LPGTAVSTMD  240
LSFPNQCQIE LPVNMPISQI NGTTTEGVWS SEQQFLQCDN DTLSGPIGSW GDPYLYVSSV  300
LD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1521791271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017647680.10.0PREDICTED: uncharacterized protein LOC108487849
TrEMBLA0A2P5VWD40.0A0A2P5VWD4_GOSBA; Uncharacterized protein
STRINGGorai.008G261800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15994813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-19related to AP2 11