PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_17362_BGI-A2_v1.0

Common Name

F383_24632

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 859aa MW: 94091.6 Da PI: 4.6811

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_17362_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.8	5.2e-54	9	135	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksg 81 lp GfrF+Ptdeel+++yL+ k++g++ e+ evi+e+d++k+ePwdLp + +k+++ ew+fF++rd+ky++g+r+nrat++g Cotton_A_17362_BGI-A2_v1.0 9 LPLGFRFRPTDEELINHYLRLKINGRHSEV-EVIPEIDVCKWEPWDLPglSVIKSDDPEWFFFCPRDRKYPNGHRSNRATDKG 90 699**********************999.99***********6447888888********************* PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 yWkatgkd++++s k++l+g+kktLvfykgrapkge+t+W+mheyr Cotton_A_17362_BGI-A2_v1.0 91 YWKATGKDRTIKS-KKSLIGMKKTLVFYKGRAPKGERTNWIMHEYR 135 *********.899**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.54E-62	4	159	IPR003441	NAC domain
PROSITE profile	PS51005	57.856	9	159	IPR003441	NAC domain
Pfam	PF02365	8.6E-28	10	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 859 aa Download sequence Send to blast
MEVLTMETLP LGFRFRPTDE ELINHYLRLK INGRHSEVEV IPEIDVCKWE PWDLPGLSVI 60 KSDDPEWFFF CPRDRKYPNG HRSNRATDKG YWKATGKDRT IKSKKSLIGM KKTLVFYKGR 120 APKGERTNWI MHEYRPTTRE LDGTAPGQSA FVLCRLFHKV EGRNDIVKYD EVEQTGYSPA 180 MIKSSPDDTS SDLLQDTVSS DTQAQKPDNL MQNDQITGDT SSCNSHMTSN ADYHATEETM 240 VEKYPLLGSN SNLYEPNYGE IDSKVFSPLM NSQLFEDLSL FVDSPYANDF GHDQNGFHFQ 300 DGTSEQDVSF PFLDDILSNH YDSCEESNTQ KNLVDGTEMP LFGDSFISKP PPPEISYLKE 360 NGRPADTDTE MPQLQFGTDV GARRWLGGPI DNNQSLQMQT SFEPTHTQPA FYNQEYRTRN 420 ISGLGNYSVG QGTFTDSAMG NINNLQQLTS LKIHVNSGGD LGGDIGMKTG TCQPLKQLNS 480 ENFGTRGAGI KIRTRGSQQQ PNSDIVNQGT APRRIRLMKL SSGPMKGSVG CVDGGKMMST 540 GLVEEEEVQS ALTEVTEAEA AEQTSSSDES EKNIVNQVTA PRRIHLQTKL STGAMKGSAG 600 CVNGGNMTSP GLVEEVQSAL TEVTEAEAAG LTSSSDELEK NIVNQGTAPR RIRLQINLST 660 GPMKGSAGCV DGGSMTSPGL VEEEVQSALT EVTEAEAAGQ TSSSDESEMN IVNQAIAPRR 720 IRLQLSTGPM NGSAGCIDGG NMTSPGLGKE EVQSALTEAT EDEATGQISS SCKTSSSDES 780 EVENRFLKFE GSRDIADESY SKPRLRVKQV DEQHSCSQKG PSLHLKPAPA LHRPNSLLVP 840 GIAIFTITLL FALFMGIWL

Sequence ? help Back to Top

Protein Sequence Length: 859 aa Download sequence Send to blast

MEVLTMETLP LGFRFRPTDE ELINHYLRLK INGRHSEVEV IPEIDVCKWE PWDLPGLSVI  60
KSDDPEWFFF CPRDRKYPNG HRSNRATDKG YWKATGKDRT IKSKKSLIGM KKTLVFYKGR  120
APKGERTNWI MHEYRPTTRE LDGTAPGQSA FVLCRLFHKV EGRNDIVKYD EVEQTGYSPA  180
MIKSSPDDTS SDLLQDTVSS DTQAQKPDNL MQNDQITGDT SSCNSHMTSN ADYHATEETM  240
VEKYPLLGSN SNLYEPNYGE IDSKVFSPLM NSQLFEDLSL FVDSPYANDF GHDQNGFHFQ  300
DGTSEQDVSF PFLDDILSNH YDSCEESNTQ KNLVDGTEMP LFGDSFISKP PPPEISYLKE  360
NGRPADTDTE MPQLQFGTDV GARRWLGGPI DNNQSLQMQT SFEPTHTQPA FYNQEYRTRN  420
ISGLGNYSVG QGTFTDSAMG NINNLQQLTS LKIHVNSGGD LGGDIGMKTG TCQPLKQLNS  480
ENFGTRGAGI KIRTRGSQQQ PNSDIVNQGT APRRIRLMKL SSGPMKGSVG CVDGGKMMST  540
GLVEEEEVQS ALTEVTEAEA AEQTSSSDES EKNIVNQVTA PRRIHLQTKL STGAMKGSAG  600
CVNGGNMTSP GLVEEVQSAL TEVTEAEAAG LTSSSDELEK NIVNQGTAPR RIRLQINLST  660
GPMKGSAGCV DGGSMTSPGL VEEEVQSALT EVTEAEAAGQ TSSSDESEMN IVNQAIAPRR  720
IRLQLSTGPM NGSAGCIDGG NMTSPGLGKE EVQSALTEAT EDEATGQISS SCKTSSSDES  780
EVENRFLKFE GSRDIADESY SKPRLRVKQV DEQHSCSQKG PSLHLKPAPA LHRPNSLLVP  840
GIAIFTITLL FALFMGIWL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-46	9	159	15	168	Stress-induced transcription factor NAC1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017649421.1	0.0	PREDICTED: NAC domain-containing protein 14 isoform X2
TrEMBL	A0A0B0MJT2	0.0	A0A0B0MJT2_GOSAR; NAC domain-containing 74
STRING	Gorai.008G261400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5594	28	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	1e-135	NAC transcription factor-like 9