PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_17341_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 209aa    MW: 22942.2 Da    PI: 11.0898
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_17341_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.63.6e-15139199363
                                 XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                      bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                 +++r + ++kNRe+A  sR+RK+a+ +eLe++v+ L++eN +L+k  ++    + +l +++
  Cotton_A_17341_BGI-A2_v1.0 139 DDRRLKLMMKNRESAAQSRARKQAYKKELEREVAHLKEENAKLRKHQKKVMAAINQLPKKN 199
                                 789*********************************************9999999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.0E-14137201IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.392139195IPR004827Basic-leucine zipper domain
PfamPF001705.1E-13140199IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1709.2E-12141195No hitNo description
CDDcd147071.77E-20141186No hitNo description
SuperFamilySSF579592.88E-9141195No hitNo description
PROSITE patternPS000360144159IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MEEVGKDISL SSLNGISLQG KHGTLISTTA TNPAFPSMIL QEFLATPFNN IPPTTSSGVL  60
SNEEPTFLCS LSPTPATILS LNTGSDPVKS NPAVNNRTAI APPSLGAAHN STFQGFGSSA  120
RVFPSFFRKR AQGNNENPDD RRLKLMMKNR ESAAQSRARK QAYKKELERE VAHLKEENAK  180
LRKHQKKVMA AINQLPKKNR LRRSLTTPF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017604126.11e-151PREDICTED: protein FD-like
TrEMBLA0A0D2TW171e-137A0A0D2TW17_GOSRA; Uncharacterized protein
TrEMBLA0A2P5R4M01e-137A0A2P5R4M0_GOSBA; Uncharacterized protein
STRINGGorai.009G269300.11e-138(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2830033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35900.18e-37bZIP family protein