PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_17136_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 268aa    MW: 29806.5 Da    PI: 4.6364
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_17136_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding506.7e-161461148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g+WT+eEd++l++ +   G  +W+++++  g++R++k+c++rw +yl
  Cotton_A_17136_BGI-A2_v1.0 14 KGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYL 61
                                79********************************************97 PP
2Myb_DNA-binding50.54.8e-1670111447
                                 S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                  ++ E++l +d++ +lG++ W++Ia +++ gRt++++k++w+++
  Cotton_A_17136_BGI-A2_v1.0  70 LSEAEEQLVIDLHSRLGNR-WSKIAGRLP-GRTDNEIKNHWNTH 111
                                 5899***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-21563IPR009057Homeodomain-like
PROSITE profilePS5129414.027961IPR017930Myb domain
SuperFamilySSF466894.9E-2711108IPR009057Homeodomain-like
SMARTSM007178.5E-131363IPR001005SANT/Myb domain
PfamPF002498.2E-151461IPR001005SANT/Myb domain
CDDcd001674.08E-91661No hitNo description
PROSITE profilePS5129426.67862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-2464117IPR009057Homeodomain-like
SMARTSM007174.2E-1466114IPR001005SANT/Myb domain
PfamPF002494.1E-1470111IPR001005SANT/Myb domain
CDDcd001679.99E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGRQPCCDKL GVKKGPWTAE EDKKLINFIL TNGQCCWRAV PKLAGLRRCG KSCRLRWTNY  60
LRPDLKRGLL SEAEEQLVID LHSRLGNRWS KIAGRLPGRT DNEIKNHWNT HIKKKLIKMG  120
IDPVTHEPLN KEAEAAENHI SETDGVGADS LEDNSSTPTE NCDNSSTPTE NCSSSVGSNS  180
LDKFCNDESL LSSLWMNDEP PLIDASWDIN IPAGGETCNG ISLPSWEENC AWLLDCQDFG  240
INDFGLDCLN DIELNTMNTL EMADKTVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5802758e-99JX580275.1 Gossypium hirsutum clone NBRI_GE12679 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017641022.10.0PREDICTED: protein ODORANT1-like
SwissprotQ50EX61e-105ODO1_PETHY; Protein ODORANT1
TrEMBLA0A2P5XVB00.0A0A2P5XVB0_GOSBA; Uncharacterized protein
STRINGGorai.003G168100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12350.11e-102myb domain protein 42
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]