PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_17125_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 363aa MW: 42233.1 Da PI: 7.0181 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 181.4 | 2.3e-56 | 7 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratks 80 +ppGfrFhPtdeelv++yL+kk+++kk++l +vik+vd+yk+ePwdL++ ++ + e++ewyfFs++dkky+tg+r+nratk+ Cotton_A_17125_BGI-A2_v1.0 7 VPPGFRFHPTDEELVNYYLRKKIASKKIDL-DVIKDVDLYKIEPWDLQElcRIGSeEQNEWYFFSHKDKKYPTGTRTNRATKA 88 69****************************.9***************954555552556************************ PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 g+Wkatg+dk+++s + +l+g++ktLvfykgrap+g+k+dW+mheyrle Cotton_A_17125_BGI-A2_v1.0 89 GFWKATGRDKPIYS-RLNLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 **************.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-61 | 5 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.269 | 7 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-28 | 8 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MNTFSHVPPG FRFHPTDEEL VNYYLRKKIA SKKIDLDVIK DVDLYKIEPW DLQELCRIGS 60 EEQNEWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKPI YSRLNLIGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETNEN GTPQEEGWVV CRVFKKRMTT VRKMGEYESS CWYDDQVSFI 180 QELESPRRIT QPYVAAAATT YHHHHHFPCK QELELQYNMP HDPFLQLPQL ESPKVPQSTA 240 PSISCNSVIP YNGTSTLQSS TLTHEEHLHN LNSLYNNNNI DQQQQAVDQV TDWRVLDKFV 300 ASQLSHEEGS KENNYTTNAA ATSYHVAEQI NLPTNESKRA EIGHHHQEYA STSTSSCQID 360 LWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-51 | 6 | 157 | 14 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847225 | 0.0 | KC847225.1 Gossypium hirsutum NAC domain protein NAC48 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017640684.1 | 0.0 | PREDICTED: NAC domain-containing protein 7 isoform X1 | ||||
Refseq | XP_017640685.1 | 0.0 | PREDICTED: NAC domain-containing protein 7 isoform X2 | ||||
Swissprot | Q9FWX2 | 1e-159 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | A0A1U8KSW9 | 0.0 | A0A1U8KSW9_GOSHI; NAC domain-containing protein 7-like | ||||
STRING | Gorai.003G169000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2111 | 26 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 1e-141 | NAC 007 |
Publications ? help Back to Top | |||
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