PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_17088_BGI-A2_v1.0
Common NameF383_07421
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 151aa    MW: 16966.3 Da    PI: 8.6032
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_17088_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.61.4e-4051041100
                      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                                 +CaaC++lrr+C++dC+l+pyfp+++p++fa vh+++Gasnv+kll++lp++ r++a++sl++eA++r++dPvyG+vg+i+ l
  Cotton_A_17088_BGI-A2_v1.0   5 RCAACRYLRRRCTQDCILSPYFPSNNPQRFASVHRIYGASNVTKLLQRLPTHLRSEAADSLYFEAQCRLEDPVYGCVGLIFLL 87 
                                 6********************************************************************************** PP

                      DUF260  84 qqqleqlkaelallkee 100
                                 qqq+++++++l ++++e
  Cotton_A_17088_BGI-A2_v1.0  88 QQQIHSAESQLIKTQAE 104
                                 **********9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.7744105IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-405102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MSSGRCAACR YLRRRCTQDC ILSPYFPSNN PQRFASVHRI YGASNVTKLL QRLPTHLRSE  60
AADSLYFEAQ CRLEDPVYGC VGLIFLLQQQ IHSAESQLIK TQAEIAVMKS QTQHPQTQPF  120
RAISGSNNLL LQQSDNDANL IFSNQVSSGF I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-3821058111LOB family transfactor Ramosa2.1
5ly0_B3e-3821058111LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5960925e-77JX596092.1 Gossypium hirsutum clone NBRI_GE32583 microsatellite sequence.
GenBankJX6074015e-77JX607401.1 Gossypium hirsutum clone NBRI_GE47812 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605666.11e-109PREDICTED: LOB domain-containing protein 24-like
SwissprotP594682e-52LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A0B0PT251e-107A0A0B0PT25_GOSAR; LOB domain-containing 24-like protein
STRINGGorai.009G123600.11e-104(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.12e-44LOB domain-containing protein 24