PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_16902_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 458aa    MW: 50929.1 Da    PI: 5.302
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_16902_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like64.51.9e-20172227155
                     G2-like   1 kprlrWtpeLHerFveaveqLG.GsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                 k+rl+W+ eL ++Fv+av+ L  Gse+  Pk+il++m+ +gL+++h+ SHLQkYRl
  Cotton_A_16902_BGI-A2_v1.0 172 KKRLVWSRELDAKFVKAVQILEkGSENVHPKRILDVMNEPGLSRAHISSHLQKYRL 227
                                 78*******************55********************************8 PP
2Response_reg59.22.2e-203513511111
                                 HHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
                Response_reg  11 rellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                                 ++ l+ +l + +y +v++a+++ e++e+l++++  +D++l+D++  ++++++++++i  e  +lp+i+vta ++ e +++ l 
  Cotton_A_16902_BGI-A2_v1.0  35 LQYLCAVLHNCNY-KVKSASSAVEVIEILRTNKhgIDIVLVDVDTADLNAFKVMETIGLET-NLPVIMVTADSNLENITKGLA 115
                                 677889999999*.***************887778**********************8777.8******************** PP

                                 TTESEEEESS--HHHHHHHH CS
                Response_reg  92 aGakdflsKpfdpeelvkav 111
                                  Ga d++ Kpf++e++ +++
  Cotton_A_16902_BGI-A2_v1.0 116 HGAVDCIIKPFEMEQIKNTI 135
                                 ****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001561.96E-1514138No hitNo description
SMARTSM004485.5E-1323135IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011025.09724139IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.8E-1434135IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23005.8E-2334159No hitNo description
SuperFamilySSF521722.13E-2134141IPR011006CheY-like superfamily
SuperFamilySSF466897.7E-14170231IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-21170231IPR009057Homeodomain-like
TIGRFAMsTIGR015574.3E-17172227IPR006447Myb domain, plants
PfamPF002495.7E-6175226IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MEDIFLENLI DPQIDDDHTL KELTVFAFNT QVLSLQYLCA VLHNCNYKVK SASSAVEVIE  60
ILRTNKHGID IVLVDVDTAD LNAFKVMETI GLETNLPVIM VTADSNLENI TKGLAHGAVD  120
CIIKPFEMEQ IKNTIQSHVA SNKASGQNLN PLPGSNARMA VKDACCSSKR KKKRLVWSRE  180
LDAKFVKAVQ ILEKGSENVH PKRILDVMNE PGLSRAHISS HLQKYRLALK KRKADTNKQG  240
LEVEPTNYCL KKREVGNFNA DRRLASQSFN GVMSPSSSSP DQKKQSQSLV YSCIDGHGPE  300
FQTPDFYYNN HRLETNPHNV ESEHVSGTTT LSPYFNGVDS EPIILSSAAV YPSPNAVFLE  360
PEANIAFHSH FDVISVPNPL YGFTIDCSTE VQYPSSTVLG RNSETYAVQN GTTISPSDTS  420
SYHYVEPENA VSGTYNSQIE CSLFEEESID WYSLLDDQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5841051e-58JX584105.1 Gossypium hirsutum clone NBRI_GE17310 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017644582.10.0PREDICTED: two-component response regulator ARR18-like
TrEMBLA0A2P5WDN50.0A0A2P5WDN5_GOSBA; Uncharacterized protein
STRINGGorai.009G006200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2076546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.15e-41response regulator 12