PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_16813_BGI-A2_v1.0

Common Name

F383_05467

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 349aa MW: 38902.7 Da PI: 8.7735

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_16813_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.4	6.8e-54	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppGfrFhPtdeelvv+yLkkk+++ +l++ +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyW Cotton_A_16813_BGI-A2_v1.0 15 LPPGFRFHPTDEELVVHYLKKKATSAPLPV-AIIAEVDLYKFDPWELPAKATFGEREWYFFSPRDRKYPNGARPNRAATSGYW 96 79**************************.88***********988899************************* PP NAM 84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 katg+dk+vl++ ++++vg+kk Lvfy g+ pkg kt+W+mheyrl Cotton_A_16813_BGI-A2_v1.0 97 KATGTDKPVLNSkGTQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 142 *****99867788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-65	7	176	IPR003441	NAC domain
PROSITE profile	PS51005	62.123	15	176	IPR003441	NAC domain
Pfam	PF02365	2.2E-28	16	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MESTDSSTVS QRPNLPPGFR FHPTDEELVV HYLKKKATSA PLPVAIIAEV DLYKFDPWEL 60 PAKATFGERE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPVLNSKG TQKVGVKKAL 120 VFYGGKPPKG IKTNWIMHEY RLPDNKNNNK PPGCDLGYKK NSLRLDDWVL CRIYKKNNTN 180 RPLGYEKDEA MDDMGGPVPT SMSIGSLQFQ TKGTSCGTFL ENHEHNLFDG MLGSDGMNNN 240 GSMSHLGRCS SSKPDLSMVN PLKRSTVPSL YWTDEDTASP STSKTFHGDH SNDGSLEKPD 300 TNGSNSIATL LSQLPQTPHL QQQTMVGSME DGIFRPSYQL PGLNWYTLN

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MESTDSSTVS QRPNLPPGFR FHPTDEELVV HYLKKKATSA PLPVAIIAEV DLYKFDPWEL  60
PAKATFGERE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPVLNSKG TQKVGVKKAL  120
VFYGGKPPKG IKTNWIMHEY RLPDNKNNNK PPGCDLGYKK NSLRLDDWVL CRIYKKNNTN  180
RPLGYEKDEA MDDMGGPVPT SMSIGSLQFQ TKGTSCGTFL ENHEHNLFDG MLGSDGMNNN  240
GSMSHLGRCS SSKPDLSMVN PLKRSTVPSL YWTDEDTASP STSKTFHGDH SNDGSLEKPD  300
TNGSNSIATL LSQLPQTPHL QQQTMVGSME DGIFRPSYQL PGLNWYTLN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-73	14	178	14	170	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ914141	0.0	JQ914141.1 Gossypium hirsutum NAC domain protein 10 (NAC10) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017618353.1	0.0	PREDICTED: NAC transcription factor 56-like
Swissprot	Q9LD44	1e-124	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A0B0P645	0.0	A0A0B0P645_GOSAR; NAC domain-containing 18-like protein
STRING	Gorai.013G167100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM190	28	276

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	1e-121	NAC domain containing protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]