PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_16674_BGI-A2_v1.0
Common NameF383_17440
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 604aa    MW: 65203.1 Da    PI: 7.0555
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_16674_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.91e-24214258145
                         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                 d+epgrCrRtDGKkWRCsr++++g+k+CErH++rgr+rsrk++e 
  Cotton_A_16674_BGI-A2_v1.0 214 DPEPGRCRRTDGKKWRCSRDAVAGQKYCERHMNRGRHRSRKPVEG 258
                                 79****************************************985 PP
2QLQ57.93.1e-20143179137
                         QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                                 ++FT+ Q+++L++Q+l++Ky++an+PvP++Ll++i+k
  Cotton_A_16674_BGI-A2_v1.0 143 GPFTPCQWMELEHQALILKYILANVPVPSNLLLPIRK 179
                                 59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.3E-11143179IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.606144179IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.1E-14144178IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.947214258IPR014977WRC domain
PfamPF088794.6E-21215257IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MDFGVVGFEG FIGSETATGF SSLGSDHQET SQKWYGSGGL FKQERSCNNE DELRSSKLAK  60
IHDDFSGSSK PLMFHHRNTS LRSNASIFFD EQEEQQMLSF SAPKPDALSV DRSSKNVTFP  120
HIYLTGYNNG GFNGANMHGV CKGPFTPCQW MELEHQALIL KYILANVPVP SNLLLPIRKS  180
LDSTDFSSFS GGLFRSNTSM GWGAFQFGFS NNTDPEPGRC RRTDGKKWRC SRDAVAGQKY  240
CERHMNRGRH RSRKPVEGQP GHSVTATAAT TSKLMPNVSS SSASAVGPVG GSGEPNSLTS  300
ARQKYENLQP GGTSNLSAAA SLNRSILNKD TVGEKMPYTA AGLSMISPNG DLKSKENPFL  360
IPKQPISYEE NLRNGFGVVS SGELNPSHKS SSMINSRNFG SSQDLTSQET DSQQSFRWFI  420
DDRPKSQSHC SAISWPELDV QSYRTQLSVS IPMAASDFTS TTSSPNNENL TSSPLRLSRE  480
FDPINIGLGV GNVVNESNQK QANWIPVSWG TSIGGPLGEA LHSNGNTMVD LKNSSLLNLM  540
TEGSENSPLV GSSPTGVLQK TTFASLSNSS AGSSPENNKT HEGVSHCNDL LGSNLLESSS  600
LPAT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017607459.10.0PREDICTED: growth-regulating factor 1-like
TrEMBLA0A0B0MKZ60.0A0A0B0MKZ6_GOSAR; Uncharacterized protein
STRINGGorai.009G277500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14542886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.11e-86growth-regulating factor 1