PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_16652_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 413aa MW: 44784.3 Da PI: 9.9695

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_16652_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.1	2.6e-15	331	374	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++eN++L+k+ Cotton_A_16652_BGI-A2_v1.0 331 RRQRRMIKNRESAARSRARKQAYTTELEAEVAKLKEENQELQKK 374 79**************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.7E-13	327	385	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.346	329	374	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.9E-15	331	374	No hit	No description
SuperFamily	SSF57959	2.81E-12	331	375	No hit	No description
Pfam	PF00170	4.4E-13	331	374	IPR004827	Basic-leucine zipper domain
CDD	cd14707	3.31E-25	331	377	No hit	No description
PROSITE pattern	PS00036	0	334	349	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
LGTNMNFKNF GSNQPPSGDG GGGNKPPGNY PISRQPSVYS LTFDEFQSTM GGIGKDFGSM 60 NMDELLKNIW SAEETQTMAS PGVGLVGNGG LQRQGSLTLP RTLSHKTVDE VWREISNEFS 120 IGTEATDNMP QRQQTLKEIT LEEFLVRAGV VREDNIQFSG KDNNVNGGFF GELPQAGSNT 180 SGFGIGFQQG GRGPNLMGNR LPDGGNQNGI QASDLPMNFN GVRSNQHHLT QLQQQPLCPK 240 QPGVEYGAQM GLQSGGQLGS PGIRCGQGLY NGLIHGGGMS MVGLRSPANH LSSDGIGKSS 300 GDSSSVSPVP YVFNGSLRSR KSSAVEKVAE RRQRRMIKNR ESAARSRARK QAYTTELEAE 360 VAKLKEENQE LQKKHVCSFP SLLKCTRFLV MEMMNVQPGA KKRCLRRTRT GPW

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

LGTNMNFKNF GSNQPPSGDG GGGNKPPGNY PISRQPSVYS LTFDEFQSTM GGIGKDFGSM  60
NMDELLKNIW SAEETQTMAS PGVGLVGNGG LQRQGSLTLP RTLSHKTVDE VWREISNEFS  120
IGTEATDNMP QRQQTLKEIT LEEFLVRAGV VREDNIQFSG KDNNVNGGFF GELPQAGSNT  180
SGFGIGFQQG GRGPNLMGNR LPDGGNQNGI QASDLPMNFN GVRSNQHHLT QLQQQPLCPK  240
QPGVEYGAQM GLQSGGQLGS PGIRCGQGLY NGLIHGGGMS MVGLRSPANH LSSDGIGKSS  300
GDSSSVSPVP YVFNGSLRSR KSSAVEKVAE RRQRRMIKNR ESAARSRARK QAYTTELEAE  360
VAKLKEENQE LQKKHVCSFP SLLKCTRFLV MEMMNVQPGA KKRCLRRTRT GPW

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017603716.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5
Swissprot	Q9M7Q4	1e-117	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	A0A1U8IIB9	0.0	A0A1U8IIB9_GOSHI; ABSCISIC ACID-INSENSITIVE 5-like protein 5
STRING	Gorai.009G275700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM734	27	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	3e-80	abscisic acid responsive elements-binding factor 2

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]