PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_16544_BGI-A2_v1.0
Common NameF383_03571
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CAMTA
Protein Properties Length: 647aa    MW: 73416.8 Da    PI: 6.284
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_16544_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1164.51.9e-51291462118
                        CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlyc 83 
                                 ++e k+rwl+++ei+aiL n++ + +  ++ + pksg++++++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++
  Cotton_A_16544_BGI-A2_v1.0  29 MEEaKSRWLRPNEIHAILCNHKYFPIYVKPVNLPKSGTIVFFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHV 111
                                 55669****************************************************************************** PP

                        CG-1  84 yYahseenptfqrrcywlLeeelekivlvhylevk 118
                                 yYah+++nptf rrcywlL+++le+ivlvhy+e++
  Cotton_A_16544_BGI-A2_v1.0 112 YYAHGQDNPTFVRRCYWLLDKSLEHIVLVHYRETQ 146
                                 ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143778.04825151IPR005559CG-1 DNA-binding domain
SMARTSM010768.2E-7628146IPR005559CG-1 DNA-binding domain
PfamPF038597.8E-4631144IPR005559CG-1 DNA-binding domain
SuperFamilySSF812964.48E-10362449IPR014756Immunoglobulin E-set
SuperFamilySSF484034.51E-9533611IPR020683Ankyrin repeat-containing domain
CDDcd002046.69E-6547611No hitNo description
Gene3DG3DSA:1.25.40.201.9E-7555611IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029710.577556611IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MDVGCSSLLV GSEIHGFRTL ADLDVQTMME EAKSRWLRPN EIHAILCNHK YFPIYVKPVN  60
LPKSGTIVFF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGQDNP  120
TFVRRCYWLL DKSLEHIVLV HYRETQESQG SPATPGNSNS SSITDQSTPL NVMEEFDSGA  180
GNAYYEEPGN SVDVRNHEMR LHEINTLEWD ELLVTNDSND STISRRDNNS CFQQLNQTAG  240
NGFLNYGGPI SADNLSMEIS MLVNLVEPVA QSNNTYFNTP TTVCNTISSS QINPDVQQKD  300
SIATGAGDPL DLLINDGLNG QDSFGKWMNY TITESPVSGD SMQESSVSSV QDSFTSPEHI  360
FTITEVSHEW AYSTEKTKIL VTGFFHQAYQ HLVKSNLFCV CGDVCNPAEI IQVGVYRCVL  420
LQHSPGLVNL YMSLDGHKPI SQVLSFEYRV PLSHDPLVPV EDESRWKEFR LQMRLAYLLF  480
STSKSLNILS GKVSPNTLKE AKTFAQKTTS ISNSWTYLLK SIEENRASFT QAKDGLFEIA  540
LKNRLKDWLL ERIIEGSKIT DFDTEGLGVL HLCAILGYTW AIHLFSWSGL SLDFRDKRGW  600
TALHWAAYYG RQVRFTSFLT FICWPYILSL KFSENWNALS NSYCSKL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017610902.10.0PREDICTED: calmodulin-binding transcription activator 5
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLA0A0B0PNS60.0A0A0B0PNS6_GOSAR; Calmodulin-binding transcription activator 5
STRINGGorai.006G079000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40212758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  3. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]