PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_16544_BGI-A2_v1.0 | ||||||||
Common Name | F383_03571 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | CAMTA | ||||||||
Protein Properties | Length: 647aa MW: 73416.8 Da PI: 6.284 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 164.5 | 1.9e-51 | 29 | 146 | 2 | 118 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlyc 83 ++e k+rwl+++ei+aiL n++ + + ++ + pksg++++++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++ Cotton_A_16544_BGI-A2_v1.0 29 MEEaKSRWLRPNEIHAILCNHKYFPIYVKPVNLPKSGTIVFFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHV 111 55669****************************************************************************** PP CG-1 84 yYahseenptfqrrcywlLeeelekivlvhylevk 118 yYah+++nptf rrcywlL+++le+ivlvhy+e++ Cotton_A_16544_BGI-A2_v1.0 112 YYAHGQDNPTFVRRCYWLLDKSLEHIVLVHYRETQ 146 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 78.048 | 25 | 151 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 8.2E-76 | 28 | 146 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 7.8E-46 | 31 | 144 | IPR005559 | CG-1 DNA-binding domain |
SuperFamily | SSF81296 | 4.48E-10 | 362 | 449 | IPR014756 | Immunoglobulin E-set |
SuperFamily | SSF48403 | 4.51E-9 | 533 | 611 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 6.69E-6 | 547 | 611 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 1.9E-7 | 555 | 611 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 10.577 | 556 | 611 | IPR020683 | Ankyrin repeat-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 647 aa Download sequence Send to blast |
MDVGCSSLLV GSEIHGFRTL ADLDVQTMME EAKSRWLRPN EIHAILCNHK YFPIYVKPVN 60 LPKSGTIVFF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGQDNP 120 TFVRRCYWLL DKSLEHIVLV HYRETQESQG SPATPGNSNS SSITDQSTPL NVMEEFDSGA 180 GNAYYEEPGN SVDVRNHEMR LHEINTLEWD ELLVTNDSND STISRRDNNS CFQQLNQTAG 240 NGFLNYGGPI SADNLSMEIS MLVNLVEPVA QSNNTYFNTP TTVCNTISSS QINPDVQQKD 300 SIATGAGDPL DLLINDGLNG QDSFGKWMNY TITESPVSGD SMQESSVSSV QDSFTSPEHI 360 FTITEVSHEW AYSTEKTKIL VTGFFHQAYQ HLVKSNLFCV CGDVCNPAEI IQVGVYRCVL 420 LQHSPGLVNL YMSLDGHKPI SQVLSFEYRV PLSHDPLVPV EDESRWKEFR LQMRLAYLLF 480 STSKSLNILS GKVSPNTLKE AKTFAQKTTS ISNSWTYLLK SIEENRASFT QAKDGLFEIA 540 LKNRLKDWLL ERIIEGSKIT DFDTEGLGVL HLCAILGYTW AIHLFSWSGL SLDFRDKRGW 600 TALHWAAYYG RQVRFTSFLT FICWPYILSL KFSENWNALS NSYCSKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017610902.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 5 | ||||
Swissprot | O23463 | 0.0 | CMTA5_ARATH; Calmodulin-binding transcription activator 5 | ||||
TrEMBL | A0A0B0PNS6 | 0.0 | A0A0B0PNS6_GOSAR; Calmodulin-binding transcription activator 5 | ||||
STRING | Gorai.006G079000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4021 | 27 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16150.1 | 0.0 | calmodulin binding;transcription regulators |
Publications ? help Back to Top | |||
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