PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_16536_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 156aa MW: 17940.8 Da PI: 8.7085 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35.2 | 2.7e-11 | 24 | 60 | 5 | 41 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41 k+ +r+++NRe+ArrsR +K++ +e L ++v++L+ + Cotton_A_16536_BGI-A2_v1.0 24 KKRKRMISNRESARRSRMKKQKLLEDLVTEVASLKVQ 60 899*******************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 8.3E-13 | 20 | 84 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.519 | 22 | 85 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.4E-7 | 22 | 92 | No hit | No description |
SuperFamily | SSF57959 | 2.25E-10 | 24 | 79 | No hit | No description |
Pfam | PF00170 | 1.3E-8 | 24 | 82 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 4.36E-17 | 25 | 74 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 27 | 42 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MSNVPGMMSS GSEPDARGVN VDEKKRKRMI SNRESARRSR MKKQKLLEDL VTEVASLKVQ 60 IHNNTNKYEA LMQKIVVLES ENNALKVQQM ELAQYLKNLQ LMQTQMELLE FNLMNQPGRT 120 LCDIIVDINE PPKVQSWQCH GSNQPAIMAF TEMLNY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017610243.1 | 1e-112 | PREDICTED: basic leucine zipper 1-like | ||||
TrEMBL | A0A1U8I5H2 | 1e-108 | A0A1U8I5H2_GOSHI; basic leucine zipper 1-like | ||||
STRING | Gorai.006G079800.1 | 1e-108 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12581 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49450.1 | 7e-23 | basic leucine-zipper 1 |