PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_16524_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 231aa    MW: 26492.6 Da    PI: 6.149
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_16524_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13e-161861146
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                                rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Cotton_A_16524_BGI-A2_v1.0 18 RGNITLEEQLLILQLHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 61
                                7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-5425IPR009057Homeodomain-like
SuperFamilySSF466891.7E-17571IPR009057Homeodomain-like
PROSITE profilePS5129422.8911367IPR017930Myb domain
SMARTSM007172.6E-141765IPR001005SANT/Myb domain
PfamPF002495.0E-151861IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-182662IPR009057Homeodomain-like
CDDcd001671.93E-73861No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MLSLKLRWLN YLRPDVRRGN ITLEEQLLIL QLHSRWGNRW SKIAQYLPGR TDNEIKNYWR  60
TRVQKHAKQL KCDVNSKEFK DTMRYLWMPR LVERIQAATT TTDTASASAA TTSNASIEQM  120
LLPNLSYYTL DNVSTAASSD SIGTQVSPIS DSTDYYNGVL ANYNPNQDYF QANHESLISP  180
IGNYCNNGDG MDFGLIELNH HWVGDGDGDG LHNLLNAEDF FFLQHQFNFN M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-137594597MYB PROTO-ONCOGENE PROTEIN
1h8a_C3e-1375968120MYB TRANSFORMING PROTEIN
1mse_C2e-137594597C-Myb DNA-Binding Domain
1msf_C2e-137594597C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017610350.11e-171PREDICTED: transcription factor MYB108-like
SwissprotQ9FGY31e-59MYB78_ARATH; Transcription factor MYB78
TrEMBLA0A2P5XZB01e-144A0A2P5XZB0_GOSBA; Uncharacterized protein
STRINGGorai.006G080800.11e-138(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.14e-52myb domain protein 78
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]