PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_16353_BGI-A2_v1.0

Common Name

F383_09477

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 948aa MW: 103914 Da PI: 4.9028

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_16353_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.2	8e-29	585	636	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+++l++l+ yFs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++ Cotton_A_16353_BGI-A2_v1.0 585 AEKNVTLSVLQPYFSGSLKDAAKSLGVCPTTLKRICRQLGIPRWPSRKINKV 636 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.427	568	656	IPR003035	RWP-RK domain
Pfam	PF02042	2.4E-26	588	636	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.91E-23	845	933	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.0E-25	849	931	No hit	No description
PROSITE profile	PS51745	20.863	849	931	IPR000270	PB1 domain
SMART	SM00666	6.0E-22	849	931	IPR000270	PB1 domain
CDD	cd06407	6.33E-32	850	930	No hit	No description
Pfam	PF00564	3.5E-17	850	930	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 948 aa Download sequence Send to blast
MESPFSCKEK GNNSSVPPRA QMEGFVGTGS SKNSLSEDPF NFSELMNFDS YAGWFNSPSA 60 TDQMFASFSL SSFPSLPYAS FDLLPVTGQS SGTFVEAADA LNGMDSSYNC GDKTVFQQTG 120 THIGNPVVPS DAELGSSNLP NSLVSGPTGP SLDEKMLRAL SLLKESSGGG ILAQVWVPIK 180 HGDQYMLTTS EQPYLLDQML SGYREVSRTY IFSAEKKPGS FPGLPGRVFI SRVPEWTSDV 240 IHYSKGEYLR FTHAVNYKVR GSIALPIFEP PDMSCCAVLE LVTMKEKPNF DSEMKTVSLA 300 LQAVNLRTIA PRQPLPQCLS GSQRAALAEI TDVLRAVCHA HRLPLALTWI PCYYTEEAVD 360 EILKVGGGEG NRRWDGKRVL CVETTACYVN ERGMQDFVHA CMEHYLEEGQ GIAGKVLRSN 420 HPFFSTDVKM YDISDYPLVH HARKCNLNAA VAIRLRSTYT GDDDYILELF LPINLKGGSE 480 QQLLLNNLSG TMQRICRSLR TVSDVEIDGG SKIEVQRGKL SDSPSLSISR RLSETELSAD 540 SEMNSNDTVP LHVSNAKSDG KEADGPREQA MSGPRRQIEK KRSTAEKNVT LSVLQPYFSG 600 SLKDAAKSLG VCPTTLKRIC RQLGIPRWPS RKINKVNRSL RKIQTVLDSV QGGLKFDPTT 660 GEFIAAGTVM QEVDTQKTLV LSNKNLPIRI SEPLDLEKSS AASLESCPDE ENSVVKLEED 720 ECSLGGNYSM AARSVLVPST CEEVKQSGVP CIDCNDDSKS VSLDAGSFQA ASLRTADRTC 780 PENADDEINI RMETDDGNAE HNHQPTYSSM TDSSDGSGSM SHGSSSSSQS FDEAKNFEMK 840 TICVDSSSKI TVKATYKDDT VRFKFEPSAG CFELYEEIAR RFKLQTGTFQ LKYLDDEEEW 900 VMLVSDSDLQ ECLEVMEYVG THNVKFQVRD VPCAIGSSGG SNCFLGGS

Sequence ? help Back to Top

Protein Sequence Length: 948 aa Download sequence Send to blast

MESPFSCKEK GNNSSVPPRA QMEGFVGTGS SKNSLSEDPF NFSELMNFDS YAGWFNSPSA  60
TDQMFASFSL SSFPSLPYAS FDLLPVTGQS SGTFVEAADA LNGMDSSYNC GDKTVFQQTG  120
THIGNPVVPS DAELGSSNLP NSLVSGPTGP SLDEKMLRAL SLLKESSGGG ILAQVWVPIK  180
HGDQYMLTTS EQPYLLDQML SGYREVSRTY IFSAEKKPGS FPGLPGRVFI SRVPEWTSDV  240
IHYSKGEYLR FTHAVNYKVR GSIALPIFEP PDMSCCAVLE LVTMKEKPNF DSEMKTVSLA  300
LQAVNLRTIA PRQPLPQCLS GSQRAALAEI TDVLRAVCHA HRLPLALTWI PCYYTEEAVD  360
EILKVGGGEG NRRWDGKRVL CVETTACYVN ERGMQDFVHA CMEHYLEEGQ GIAGKVLRSN  420
HPFFSTDVKM YDISDYPLVH HARKCNLNAA VAIRLRSTYT GDDDYILELF LPINLKGGSE  480
QQLLLNNLSG TMQRICRSLR TVSDVEIDGG SKIEVQRGKL SDSPSLSISR RLSETELSAD  540
SEMNSNDTVP LHVSNAKSDG KEADGPREQA MSGPRRQIEK KRSTAEKNVT LSVLQPYFSG  600
SLKDAAKSLG VCPTTLKRIC RQLGIPRWPS RKINKVNRSL RKIQTVLDSV QGGLKFDPTT  660
GEFIAAGTVM QEVDTQKTLV LSNKNLPIRI SEPLDLEKSS AASLESCPDE ENSVVKLEED  720
ECSLGGNYSM AARSVLVPST CEEVKQSGVP CIDCNDDSKS VSLDAGSFQA ASLRTADRTC  780
PENADDEINI RMETDDGNAE HNHQPTYSSM TDSSDGSGSM SHGSSSSSQS FDEAKNFEMK  840
TICVDSSSKI TVKATYKDDT VRFKFEPSAG CFELYEEIAR RFKLQTGTFQ LKYLDDEEEW  900
VMLVSDSDLQ ECLEVMEYVG THNVKFQVRD VPCAIGSSGG SNCFLGGS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017649259.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_017649260.1	0.0	PREDICTED: protein NLP9-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A0B0P8I8	0.0	A0A0B0P8I8_GOSAR; Protein NLP9-like protein
STRING	Gorai.011G138700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]