PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_16330_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 180aa    MW: 19711 Da    PI: 4.07
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_16330_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.32.1e-142441055
                         AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                +++g+Wv+eIr p   ++++r++lg++ t+e Aa+a++aa ++l+g
  Cotton_A_16330_BGI-A2_v1.0  2 RSWGSWVSEIRAP---NQKTRIWLGSYSTPEAAARAYDAALLCLKG 44
                                57**********9...336************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.7E-25153IPR001471AP2/ERF domain
CDDcd000182.14E-15152No hitNo description
SMARTSM003809.5E-26158IPR001471AP2/ERF domain
PROSITE profilePS5103218.4152IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-16253IPR016177DNA-binding domain
PfamPF008473.4E-8244IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MRSWGSWVSE IRAPNQKTRI WLGSYSTPEA AARAYDAALL CLKGSSANLN FPLTSSHYIP  60
DTIMSPKSIQ RVAAAAANSF VDDNPAAAAT PLISPPLAPS TSSNTSSQSN QVDDDVFFIQ  120
ALVDEPVSMM EPWYSFDSLQ MQSPKFGDQV FNVTPFDPPS MTTIDDLYEE AGDIRLWSFC
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6167761e-74JX616776.1 Gossypium hirsutum clone NBRI_GE61662 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017645219.11e-130PREDICTED: ethylene-responsive transcription factor ERF014
SwissprotQ9SFE45e-43ERF12_ARATH; Ethylene-responsive transcription factor ERF012
TrEMBLA0A1U8PYR21e-127A0A1U8PYR2_GOSHI; ethylene-responsive transcription factor ERF014-like
TrEMBLA0A2P5WLY21e-127A0A2P5WLY2_GOSBA; Uncharacterized protein
STRINGGorai.010G048900.11e-111(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29992767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.11e-36ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]