PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_16296_BGI-A2_v1.0 | ||||||||
Common Name | F383_09505 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 299aa MW: 33878.2 Da PI: 6.6265 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.5 | 1.1e-52 | 8 | 132 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppGfrFhPtdeelv++yL++k++++++ + +i+e+d+yk++PwdLp + +ekewyfFs+rd+ky++g+r+nra+ sgyW Cotton_A_16296_BGI-A2_v1.0 8 LPPGFRFHPTDEELVMHYLCRKCASQSIAV-PIIAEIDLYKYDPWDLPDLALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYW 89 79*************************999.88***************65556799*************************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 katg dk++ + + vg+kk Lvfy g+apkgekt+W+mheyrl Cotton_A_16296_BGI-A2_v1.0 90 KATGADKPIGQ--PKPVGIKKALVFYAGKAPKGEKTNWIMHEYRL 132 *********98..789***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.49E-63 | 4 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.701 | 8 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.9E-28 | 9 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MTASELQLPP GFRFHPTDEE LVMHYLCRKC ASQSIAVPII AEIDLYKYDP WDLPDLALYG 60 EKEWYFFSPR DRKYPNGSRP NRAAGSGYWK ATGADKPIGQ PKPVGIKKAL VFYAGKAPKG 120 EKTNWIMHEY RLADVDRSAR KKNSLRLDDW VLCRIYNKKG AIEKQPPQGS IGKSSAVTEI 180 EDKKPDIATL GVDTRHLPPP PTGLVNDYVY FDTSESVPRL HTDSSCSEHV VSPEFTCEVQ 240 SEPQWKDWGS ATNTTTTNAL DFPYNYMDAT VDNGFPAHFQ SNNQLSPLQD MFMYLQKPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-82 | 4 | 164 | 11 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00121 | DAP | Transfer from AT1G01720 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU706339 | 0.0 | EU706339.1 Gossypium hirsutum NAC domain protein NAC2 (NAC2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017646332.1 | 0.0 | PREDICTED: NAC domain-containing protein 2 | ||||
Swissprot | Q39013 | 1e-158 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A0B0Q1T4 | 0.0 | A0A0B0Q1T4_GOSAR; NAC domain-containing 2-like protein | ||||
TrEMBL | A0A1U8PVY5 | 0.0 | A0A1U8PVY5_GOSHI; NAC domain-containing protein 2-like | ||||
STRING | Gorai.010G051900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM190 | 28 | 276 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-160 | NAC family protein |