PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_16168_BGI-A2_v1.0
Common NameF383_29537
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 270aa    MW: 30747.1 Da    PI: 4.4017
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_16168_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.92.2e-2065118356
                                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                 k++++t+eq+  Le+ Fe ++++  e++ +LAkklgL+ rqV vWFqNrRa++k
  Cotton_A_16168_BGI-A2_v1.0  65 KKRRLTSEQVYLLEKSFEAENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWK 118
                                 56789************************************************9 PP
2HD-ZIP_I/II131.82.5e-4264156193
                 HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 
                                 ekkrrl++eqv lLE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy+ Lk+++d+l+++ +++ ke
  Cotton_A_16168_BGI-A2_v1.0  64 EKKRRLTSEQVYLLEKSFEAENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSFDSLQSNYDTILKE 146
                                 69********************************************************************************* PP

                 HD-ZIP_I/II  84 veeLreelke 93 
                                 +e+L++e+++
  Cotton_A_16168_BGI-A2_v1.0 147 NEKLKSEVAS 156
                                 *****99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-1956122IPR009057Homeodomain-like
PROSITE profilePS5007117.97760120IPR001356Homeobox domain
SMARTSM003896.3E-1963124IPR001356Homeobox domain
CDDcd000865.75E-1865121No hitNo description
PfamPF000461.2E-1765118IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.7E-2266127IPR009057Homeodomain-like
PRINTSPR000312.8E-691100IPR000047Helix-turn-helix motif
PROSITE patternPS00027095118IPR017970Homeobox, conserved site
PRINTSPR000312.8E-6100116IPR000047Helix-turn-helix motif
PfamPF021831.1E-17120162IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MESGRLFFNP YTTHRNMLLL GNTEPIFRGA RTMVSMEENP KKRLFFSSPE DLYDEEYYDE  60
QLPEKKRRLT SEQVYLLEKS FEAENKLEPE RKSQLAKKLG LQPRQVAVWF QNRRARWKTK  120
QLERDYDLLK SSFDSLQSNY DTILKENEKL KSEVASLTEK LQAKDVATEA IAGEKDEGLA  180
AEMASALQFS MKVEDRLSSG SVGSAVVDED APQLVDSGNS YFPSDEYSRG IGPFDGVQSE  240
DEDGSDNCGS YFSDVFATTE QEALGLWAWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112120RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM1347920.0HM134792.1 Gossypium hirsutum homeodomain-leucine zipper protein HD3 (HB3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017647386.10.0PREDICTED: homeobox-leucine zipper protein HAT5
SwissprotQ022832e-99HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A0B0MZW00.0A0A0B0MZW0_GOSAR; Homeobox-leucine zipper HAT5-like protein
STRINGGorai.011G095900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88842738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-96homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]