PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_16124_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 414aa MW: 45779.7 Da PI: 9.2341

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_16124_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.8e-05	186	208	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg+ F +nL+ H+ + H Cotton_A_16124_BGI-A2_v1.0 186 SCPECGEIFMKAENLELHQAVrH 208 8******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	185	208	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.182	185	213	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.82E-23	210	413	No hit	No description
Gene3D	G3DSA:3.90.228.10	1.6E-16	211	412	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MEAYQNQNKW PQKIDKPPSW VVLKGFFFGK HHHHQQEQEE QQKLQPKKKV KKQKQQQKEQ 60 VMEETGKKCK KMRCSGSLCS NTKVIHCRPE MASPEVHKKR ASFGSFDTSS RSMKAPLREL 120 NGVAVSSTNS SSLLSVSSAA AASSSAGGSF GGMPFRRFSG CYECKLVVDP LLGISKDPSL 180 RGTICSCPEC GEIFMKAENL ELHQAVRHAV SELGPEDTSK NIVEIIFKSS WLKKQTPICQ 240 IDRILKVQNT PKTISKLEEY RDSIKSKATK KHPRCIADGN ELLRFHCTTF ACSLGLSGST 300 NLCNTIPKCN VCSIIKNGFK VAQETNGKGI LTTATSGKAH DKAAGVEDGD YEKRAMLVCR 360 VIAGRVKKNI MEGDNLEEYD SVAGAVGVYS DLDELFVFNP NAILPCFVVI YRGF

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MEAYQNQNKW PQKIDKPPSW VVLKGFFFGK HHHHQQEQEE QQKLQPKKKV KKQKQQQKEQ  60
VMEETGKKCK KMRCSGSLCS NTKVIHCRPE MASPEVHKKR ASFGSFDTSS RSMKAPLREL  120
NGVAVSSTNS SSLLSVSSAA AASSSAGGSF GGMPFRRFSG CYECKLVVDP LLGISKDPSL  180
RGTICSCPEC GEIFMKAENL ELHQAVRHAV SELGPEDTSK NIVEIIFKSS WLKKQTPICQ  240
IDRILKVQNT PKTISKLEEY RDSIKSKATK KHPRCIADGN ELLRFHCTTF ACSLGLSGST  300
NLCNTIPKCN VCSIIKNGFK VAQETNGKGI LTTATSGKAH DKAAGVEDGD YEKRAMLVCR  360
VIAGRVKKNI MEGDNLEEYD SVAGAVGVYS DLDELFVFNP NAILPCFVVI YRGF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017604084.1	0.0	PREDICTED: uncharacterized protein LOC108450822
TrEMBL	A0A0D2UT53	0.0	A0A0D2UT53_GOSRA; Uncharacterized protein
STRING	Gorai.009G243200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1916	28	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	7e-96	C2H2-like zinc finger protein