PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_16073_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 218aa MW: 24413.2 Da PI: 6.2508 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58 | 2.3e-18 | 63 | 112 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g Cotton_A_16073_BGI-A2_v1.0 63 TYRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 112 69****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.47E-22 | 63 | 121 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.9E-36 | 63 | 126 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.604 | 63 | 120 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.2E-12 | 63 | 112 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-32 | 63 | 121 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.58E-34 | 64 | 121 | No hit | No description |
PRINTS | PR00367 | 8.3E-11 | 64 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.3E-11 | 86 | 102 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MEVPLQAEHE LELETQSSSS SSSSSSSSPL VIKSNKIQKL TQKTNENKRK FNNGDELERE 60 HPTYRGVRMR QWGKWVSEIR EPRKKSRIWL GTFPTAEMAA RAHDVAALAI KGKSAYLNFP 120 DIAHEFPRPV SSSPKDIQAA AAKAAALSYD QMAPRSPSCT ASSTVSHDST SSSSNDKDDA 180 FIDLPDLLMD MNHQMYEFWG VDINGFLGSE EPRLWEYC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-19 | 53 | 126 | 4 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017641229.1 | 1e-163 | PREDICTED: ethylene-responsive transcription factor ERF038-like | ||||
Swissprot | Q9ZQP3 | 9e-54 | ERF38_ARATH; Ethylene-responsive transcription factor ERF038 | ||||
TrEMBL | A0A1V0FWX5 | 1e-161 | A0A1V0FWX5_GOSHI; Ethylene response factor | ||||
STRING | Gorai.003G175100.1 | 1e-134 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2492 | 23 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35700.1 | 6e-50 | ERF family protein |
Publications ? help Back to Top | |||
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