PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_16065_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 315aa    MW: 35561.6 Da    PI: 7.601
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_16065_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.1e-19171221255
                         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 +y+GVr+++ +g+++AeIrdp+ +g   r +lg+f ta eAaka+++a+ kl+g
  Cotton_A_16065_BGI-A2_v1.0 171 HYRGVRQRP-WGKFAAEIRDPTRRG--SRMWLGTFETAIEAAKAYDRAAFKLRG 221
                                 8********.**********97665..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.7E-32170230IPR001471AP2/ERF domain
CDDcd000185.28E-30170229No hitNo description
SuperFamilySSF541712.75E-22171230IPR016177DNA-binding domain
PROSITE profilePS5103224.092171229IPR001471AP2/ERF domain
PfamPF008477.3E-13171221IPR001471AP2/ERF domain
SMARTSM003804.2E-37171235IPR001471AP2/ERF domain
PRINTSPR003671.4E-13172183IPR001471AP2/ERF domain
PRINTSPR003671.4E-13211231IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEASSEVTSA LQYIKLYLLG EFSPVGLGSV SSENQWLPQS KPRVSSSGSE SHLSSDSSFT  60
VSKFNCLDDD DDFFQFSTDF PGFQFESKPQ IIDLTTPKSL SSNAGAFEFE VKPQIAQIST  120
TKQKVSSNSS SQNRKRWLKI SLPHKMEQIQ FGKTDLAQAE PKVSNSEDKK HYRGVRQRPW  180
GKFAAEIRDP TRRGSRMWLG TFETAIEAAK AYDRAAFKLR GSKAILNFPL EAGTSDTRAD  240
DWERKPSRDD GEREERQVKA VKREKDDEVT KTRENGEVPL TPSNWNAFLD WNNDQKGFFN  300
VPLLSPLSFP QVVVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-29170230161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-29170236470ATERF1
3gcc_A2e-29170236470ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4108650.0KC410865.1 Gossypium hirsutum ethylene-responsive transcription factor (ERF9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017639607.10.0PREDICTED: ethylene-responsive transcription factor 5-like
SwissprotO803412e-62EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A2P5YBZ60.0A0A2P5YBZ6_GOSBA; Uncharacterized protein
STRINGGorai.003G176200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.18e-62ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]