PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_15951_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 182aa MW: 19971.6 Da PI: 8.4859 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35.3 | 2.4e-11 | 77 | 116 | 4 | 43 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 +k +rr+++NReAAr+sR+RKka++++Le +L + k Cotton_A_15951_BGI-A2_v1.0 77 DKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLMQLEK 116 689**************************85555544333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 3.8E-8 | 72 | 122 | No hit | No description |
SMART | SM00338 | 3.8E-6 | 74 | 134 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.829 | 76 | 120 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 8.1E-9 | 78 | 119 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.41E-7 | 78 | 120 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 81 | 96 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MDFPSTQFVP SRMMGTYQPI HQIGMWGENF KSIGNPSISA SVIVEVDNKL ENESETASHE 60 MPAPSCKHDQ EASKPFDKIQ RRLAQNREAA RKSRLRKKAY VQQLESSRLK LMQLEKELEQ 120 AREQQGLYIG GGLEAGHLGF SGAVSPGPFV NGSSGSGLVF MLSSDSSHNI LSSASMSSQK 180 IL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017616168.1 | 1e-104 | PREDICTED: transcription factor TGA1-like isoform X2 | ||||
Swissprot | Q39237 | 1e-47 | TGA1_ARATH; Transcription factor TGA1 | ||||
TrEMBL | A0A1U8LG52 | 1e-102 | A0A1U8LG52_GOSHI; transcription factor TGA1-like isoform X3 | ||||
STRING | Gorai.008G102300.1 | 2e-98 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2976 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65210.5 | 1e-41 | bZIP family protein |