PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_15893_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 319aa MW: 36280 Da PI: 9.0253

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_15893_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	157.6	5.3e-49	22	155	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksg 81 pGfrFhPtdeelv +yLk+kve+k+l++ e ik++diyk++PwdLpk +v + +e+e yfF+kr +ky+++ r+nr+t sg Cotton_A_15893_BGI-A2_v1.0 22 LPGFRFHPTDEELVGFYLKRKVEKKPLRF-ELIKQIDIYKFDPWDLPKasMVGGgGESESYFFCKRGRKYRNSVRPNRVTGSG 103 59***********************99.99***********5343333366699******************* PP NAM 82 yWkatgkdkevlskkgel.....vglkktLvfykgrapkgektdWvmheyrl 128 +Wkatg dk+v++++g + +glkktLv+y+g a kg+ktdW+mhe+rl Cotton_A_15893_BGI-A2_v1.0 104 FWKATGIDKPVYAQTGDHqglacIGLKKTLVYYRGAAGKGTKTDWMMHEFRL 155 *********9444346677*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	51.159	21	188	IPR003441	NAC domain
SuperFamily	SSF101941	1.03E-51	22	188	IPR003441	NAC domain
Pfam	PF02365	1.7E-25	23	155	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MMNVDDVQGV NDNKADHEDI QLPGFRFHPT DEELVGFYLK RKVEKKPLRF ELIKQIDIYK 60 FDPWDLPKAS MVGGGGESES YFFCKRGRKY RNSVRPNRVT GSGFWKATGI DKPVYAQTGD 120 HQGLACIGLK KTLVYYRGAA GKGTKTDWMM HEFRLPYPHE STTVVAFSNP KFAAQEAEVW 180 TICRIFKRNS SLKKHKQDWR QVTAKRASLT TAPTSQTCSV ESKSNVQGKY ITFGSPFIVD 240 YHHHNDEEKP SMLVNHHNIS GKNQSQWHVT DRMSSAAMAQ IPSSMAASSS SFSNDDFFTE 300 ANWDELKSVV EFALEPFPM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-45	23	194	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-45	23	194	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-45	23	194	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-45	23	194	19	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-45	23	194	22	174	NAC domain-containing protein 19
3swm_B	1e-45	23	194	22	174	NAC domain-containing protein 19
3swm_C	1e-45	23	194	22	174	NAC domain-containing protein 19
3swm_D	1e-45	23	194	22	174	NAC domain-containing protein 19
3swp_A	1e-45	23	194	22	174	NAC domain-containing protein 19
3swp_B	1e-45	23	194	22	174	NAC domain-containing protein 19
3swp_C	1e-45	23	194	22	174	NAC domain-containing protein 19
3swp_D	1e-45	23	194	22	174	NAC domain-containing protein 19
4dul_A	1e-45	23	194	19	171	NAC domain-containing protein 19
4dul_B	1e-45	23	194	19	171	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847219	0.0	KC847219.1 Gossypium hirsutum NAC domain protein NAC42 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016720197.1	0.0	PREDICTED: transcription factor JUNGBRUNNEN 1-like
Refseq	XP_017618496.1	0.0	PREDICTED: transcription factor JUNGBRUNNEN 1
TrEMBL	A0A1U8M082	0.0	A0A1U8M082_GOSHI; transcription factor JUNGBRUNNEN 1-like
STRING	Gorai.002G036700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM306	28	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	1e-81	NAC domain containing protein 42