PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_15865_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 158aa MW: 18136.7 Da PI: 8.5971 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.9 | 2.5e-15 | 5 | 101 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkeg 77 f kvlt+ d k rl +p++ ++++ +g+ +sk ++d++g +W +++ y +++g+ vl++GW++Fv +g+ +g Cotton_A_15865_BGI-A2_v1.0 5 FSKVLTNTDIQK--RLAVPNNSLKHFeleNGN--CSKSFEVKDKNGFTWPFRC-YVRNDGAykkPVLSSGWRQFVLNKGVHQG 82 678887766665..59*******777864444..9999***************.54444443559****************** PP -EEEEEE-SSSEE..EEEE CS B3 78 DfvvFkldgrsefelvvkv 96 D ++++ d + e+++++ v Cotton_A_15865_BGI-A2_v1.0 83 DLITLYKDVEAEASYKIEV 101 *****95544555566655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.024 | 3 | 105 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.7E-15 | 4 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.76E-19 | 4 | 101 | No hit | No description |
SuperFamily | SSF101936 | 7.19E-15 | 4 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.9E-12 | 5 | 101 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-6 | 5 | 105 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MKILFSKVLT NTDIQKRLAV PNNSLKHFEL ENGNCSKSFE VKDKNGFTWP FRCYVRNDGA 60 YKKPVLSSGW RQFVLNKGVH QGDLITLYKD VEAEASYKIE VQRKIKLLGK ECWYNLEPDQ 120 PTGATAQDKR KILLFGKECG YFLEPEQPTD ATGEVIQD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017617728.1 | 1e-116 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like | ||||
TrEMBL | A0A2P5YSS0 | 1e-113 | A0A2P5YSS0_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.011G111100.1 | 1e-103 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16950 | 4 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01500.1 | 4e-11 | B3 family protein |