PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_15754_BGI-A2_v1.0 | ||||||||
Common Name | F383_21942 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 213aa MW: 23658.1 Da PI: 8.2878 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.8 | 3.2e-42 | 48 | 147 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da+sslvyeA++r+rdPvyG++g i++l Cotton_A_15754_BGI-A2_v1.0 48 PCAACKLLRRRCAEECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPENQRADAASSLVYEANVRLRDPVYGCMGAISAL 130 7********************************************************************************** PP DUF260 84 qqqleqlkaelallkee 100 qqq+++l+ae++++++e Cotton_A_15754_BGI-A2_v1.0 131 QQQVQSLQAEINAVRAE 147 ************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.586 | 47 | 148 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.6E-42 | 48 | 145 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MCVFRERFDE IGKKIKREAD VVSFGGHHHQ IGRRHIMGSH GTLNTITPCA ACKLLRRRCA 60 EECPFSPYFS PHEPQKFASV HKVFGASNVS KMLMEVPENQ RADAASSLVY EANVRLRDPV 120 YGCMGAISAL QQQVQSLQAE INAVRAEIMK HKCREANLIP SPSHLALLSS GAVSIAAPPP 180 MPLPQPTTAA DYNTISDENV TYTLDNKYYI DKY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-47 | 48 | 161 | 11 | 124 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-47 | 48 | 161 | 11 | 124 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017618787.1 | 1e-157 | PREDICTED: LOB domain-containing protein 15-like | ||||
Swissprot | Q8L5T5 | 4e-77 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A0B0P0X6 | 1e-155 | A0A0B0P0X6_GOSAR; LOB domain-containing 15-like protein | ||||
STRING | Gorai.013G005900.1 | 1e-130 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1927 | 27 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 1e-74 | LOB domain-containing protein 15 |
Publications ? help Back to Top | |||
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