PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_15665_BGI-A2_v1.0

Common Name

F383_06351

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 451aa MW: 51229.8 Da PI: 4.969

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_15665_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	126.8	1.7e-39	44	174	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgy 82 G+rFhPtd el+++yL +k g++ + ++i+e+ di+ +ePw+Lp ++++++++ wyfF + + ky++g+r nr+t++gy Cotton_A_15665_BGI-A2_v1.0 44 TGYRFHPTDFELLHYYLLNKNLGRDSLV-QAIAELeDICGLEPWQLPghSNIHSGDHVWYFFYRPSFKYQNGSRINRTTNEGY 125 7*********************9777.7788888*******6448888999********************** PP NAM 83 Wkatgkdkevlsk.kgelvglkktLvfykg..rapkgektdWvmheyrl 128 Wk tgk + ++++ ++ ++g k+tLvf+kg ++++ kt W+mhey+l Cotton_A_15665_BGI-A2_v1.0 126 WKPTGKPRVIMARdQDIEIGKKRTLVFHKGrvNDNTKMKTGWIMHEYEL 174 ********866677******98334555669******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	44.803	42	192	IPR003441	NAC domain
SuperFamily	SSF101941	5.75E-45	42	192	IPR003441	NAC domain
Pfam	PF02365	2.0E-21	44	174	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MRNKKGYHII HPIPNEERFS SYYCYYLFWV AVGYYLWKKI LTITGYRFHP TDFELLHYYL 60 LNKNLGRDSL VQAIAELEDI CGLEPWQLPG HSNIHSGDHV WYFFYRPSFK YQNGSRINRT 120 TNEGYWKPTG KPRVIMARDQ DIEIGKKRTL VFHKGRVNDN TKMKTGWIMH EYELTATLPN 180 QATFVLCKLK RKFGKAEVSC IEEGQPSHYL PPNLGNYIAN NANQAEAARC LTANSDPNEM 240 LTQLEALNDH EELEHQSIEW WNSYVGGGFP KHDGSGDFGT HGAENAIPNH HLLTETTMGQ 300 EVLQDQSGTN EQDISNLGDL GPGDERSNQH KLVMDDDGCN MPSNSENDTA EDSVKMDLST 360 FAGPSTDEEV FAGLEALPEA QGNRIGQMID DWILDEGIRN AFDNQCSREE QNATAITGGC 420 NLSFAPDALN IPRKRSRTDY CYEGFGFDTN Q

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MRNKKGYHII HPIPNEERFS SYYCYYLFWV AVGYYLWKKI LTITGYRFHP TDFELLHYYL  60
LNKNLGRDSL VQAIAELEDI CGLEPWQLPG HSNIHSGDHV WYFFYRPSFK YQNGSRINRT  120
TNEGYWKPTG KPRVIMARDQ DIEIGKKRTL VFHKGRVNDN TKMKTGWIMH EYELTATLPN  180
QATFVLCKLK RKFGKAEVSC IEEGQPSHYL PPNLGNYIAN NANQAEAARC LTANSDPNEM  240
LTQLEALNDH EELEHQSIEW WNSYVGGGFP KHDGSGDFGT HGAENAIPNH HLLTETTMGQ  300
EVLQDQSGTN EQDISNLGDL GPGDERSNQH KLVMDDDGCN MPSNSENDTA EDSVKMDLST  360
FAGPSTDEEV FAGLEALPEA QGNRIGQMID DWILDEGIRN AFDNQCSREE QNATAITGGC  420
NLSFAPDALN IPRKRSRTDY CYEGFGFDTN Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-26	45	197	20	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-26	45	197	20	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-26	45	197	20	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-26	45	197	20	170	NO APICAL MERISTEM PROTEIN
3swm_A	2e-26	45	197	23	173	NAC domain-containing protein 19
3swm_B	2e-26	45	197	23	173	NAC domain-containing protein 19
3swm_C	2e-26	45	197	23	173	NAC domain-containing protein 19
3swm_D	2e-26	45	197	23	173	NAC domain-containing protein 19
3swp_A	2e-26	45	197	23	173	NAC domain-containing protein 19
3swp_B	2e-26	45	197	23	173	NAC domain-containing protein 19
3swp_C	2e-26	45	197	23	173	NAC domain-containing protein 19
3swp_D	2e-26	45	197	23	173	NAC domain-containing protein 19
4dul_A	2e-26	45	197	20	170	NAC domain-containing protein 19
4dul_B	2e-26	45	197	20	170	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847248	0.0	KC847248.1 Gossypium hirsutum NAC domain protein NAC71 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017628263.1	0.0	PREDICTED: NAC domain-containing protein 86-like
TrEMBL	A0A0B0NVR6	0.0	A0A0B0NVR6_GOSAR; NAC domain-containing 4-like protein
STRING	Gorai.007G114500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19731	4	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49530.1	1e-36	NAC domain containing protein 62