PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_15662_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 399aa    MW: 45083 Da    PI: 9.288
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_15662_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.41.2e-32110214199
                                 EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                                 f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+
  Cotton_A_15662_BGI-A2_v1.0 110 FDKVVTPSDVGKLNRLVIPKQHAEKYfplhSSSNEKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDT 192
                                 89****************************66678899********************************************* PP

                                 EEEEE-.SS.SEE..EEEEE-S CS
                          B3  80 vvFkld.gr.sefelvvkvfrk 99 
                                 v F++  g+  + +l++ ++r+
  Cotton_A_15662_BGI-A2_v1.0 193 VSFQRGvGEsGKHRLYIDWRRR 214
                                 ****665777888899999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.0E-42104222IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-30107214IPR015300DNA-binding pseudobarrel domain
CDDcd100172.41E-27108209No hitNo description
PROSITE profilePS5086315.086110215IPR003340B3 DNA binding domain
SMARTSM010191.5E-24110215IPR003340B3 DNA binding domain
PfamPF023626.6E-30110214IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MNFVQDEDHE KNDEVTRENT SNFPFSTSSS SATSKYKDTV AQQHQKHLWL GTLDSREDYK  60
VQVPAIKFEK KLGQMDLSLG NNNEYQSNIG SCIGGDSGST TRCIEKEHMF DKVVTPSDVG  120
KLNRLVIPKQ HAEKYFPLHS SSNEKGLLLN FEDRNGKSWR FRYSYWNSSQ SYVMTKGWSR  180
FVKEKKLDAG DTVSFQRGVG ESGKHRLYID WRRRPNAPDP TTLAHIQLQS QFNFPHSVRW  240
GSLYSMPQPM CVPRNYEPLH CLNYSIYPNT HRQRQAITYG NAGQYYPRSS SGSHHHQIGA  300
VQAGGAEPMV IDSVPVVQGN KTVAKRLRLF GVNMECPNTT QTESSSSFPH GTIGSDDSPH  360
FSSFSRQSTL SNNNTSRQSG MQAEYSKKGK SSLSIDLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-651052173116B3 domain-containing transcription factor NGA1
5os9_B2e-651052173116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA4. {ECO:0000269|PubMed:16603651}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017629751.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
SwissprotQ6EU301e-80Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
SwissprotQ9MAN14e-81NGA3_ARATH; B3 domain-containing transcription factor NGA3
TrEMBLA0A2P5WGH40.0A0A2P5WGH4_GOSBA; Uncharacterized protein
STRINGGorai.007G114200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.13e-83B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]