PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_15659_BGI-A2_v1.0
Common NameF383_19812
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 732aa    MW: 80537.5 Da    PI: 7.0615
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_15659_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.4e-162468147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                r rWT+eE+ ++++a k++G   W +I +++g ++t+ q++s+ qk+
  Cotton_A_15659_BGI-A2_v1.0 24 RERWTEEEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68
                                78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.91E-171874IPR009057Homeodomain-like
PROSITE profilePS5129421.0911973IPR017930Myb domain
TIGRFAMsTIGR015577.9E-172271IPR006447Myb domain, plants
SMARTSM007177.3E-132371IPR001005SANT/Myb domain
PfamPF002493.0E-132467IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-82464IPR009057Homeodomain-like
CDDcd001671.39E-92669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MDAYSSGEEL LIKTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ  60
IRSHAQKFFS KLEKEALTKG IPTGQALDIE IPPPRPKRKP RNPYPRKMSA ATSVQMGAKD  120
GKSETPVSSL HCKQAFNLEK EPLPERPSRD EKSSNLKEIL DDNCSEVFTL LHEANCSSMS  180
SVNKNFIPTS TVLRNSCPLR EFVPSLKETI NKDTSKPSNL ENSCTSYEKP AQVQRKDDMD  240
GATCTDEMQA TRNNPQHVAV HVLDGSPGTC APNPSMDITF QDSIFHPMGD IHGQVNLFAN  300
PAASATTAHQ NNAPRSTHQA FPTFHTPFMH LQRNQEDYRS FLHVSSTFSS LVVSTLLQNP  360
AAHAAASFAA TFWPYANVQN SDDSPACDQK GFPSRQMNSA TSMAAIAAAT VAAATAWWAA  420
HGLLSVCAPL QTGCTCAPAS TAAVTPMENG EAPAANMERK MYAGQDPSMQ DQRLDPQYAE  480
AMQCQPSASK SPTSSSSDRE ESGEAKANTE VKATAATEPQ DPNKTKNGKQ VDRSSCGSNT  540
PSSSDVEIDV LEKNKEDKED PKPADANHPQ VECSNRRGRS STNLSDSWKE VSEGGRLAFQ  600
ALFSREVLPQ SFSPPHDRKN KEQQKESVGE DEQNPDQNNG ETSILHFSSE AFRSCSNHQG  660
VEKKALSKAK NIVDKSLLTI GLGHEKLKAR QTGFKPYKRC SVEAKESRVM NTGSQGEEKD  720
PKRIRLEGEA PT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194100RPKRKPR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00654PBMTransfer from LOC_Os08g06110Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017630447.10.0PREDICTED: protein LHY isoform X1
TrEMBLA0A0B0MCK90.0A0A0B0MCK9_GOSAR; Protein LHY-like protein
STRINGGorai.007G113900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55762645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.31e-120MYB_related family protein