PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_15646_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 377aa MW: 43016.8 Da PI: 6.7453 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.6 | 8.6e-52 | 15 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratks 80 +ppGfrFhPt+eel+++yL+kkv+ +k++l +vi++vd++k+ePwd+++ k+ + +++wyfFs++dkky+tg+r+nrat++ Cotton_A_15646_BGI-A2_v1.0 15 VPPGFRFHPTEEELLQYYLRKKVSYEKIDL-DVIRDVDLNKLEPWDIQEscKIGTtPQNDWYFFSHKDKKYPTGTRTNRATAA 96 69****************************.9***************963433332456************************ PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g+Wkatg+dk ++s + + +g++ktLvfykgrap+g+k+dW+mheyrl Cotton_A_15646_BGI-A2_v1.0 97 GFWKATGRDKVIYS-NCRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 143 **************.8889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.2E-57 | 9 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.074 | 15 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-27 | 16 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009809 | Biological Process | lignin biosynthetic process | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MPENMSISVN GQSQVPPGFR FHPTEEELLQ YYLRKKVSYE KIDLDVIRDV DLNKLEPWDI 60 QESCKIGTTP QNDWYFFSHK DKKYPTGTRT NRATAAGFWK ATGRDKVIYS NCRRIGMRKT 120 LVFYKGRAPH GQKSDWIMHE YRLDDNIVET TVSNAMGEGT QEEGWVVCRI FKKKNHHKTL 180 DNPNSSSLGS ESRNHMLSAC NEGELEQILE HMRRNCNEEG VANNSWRLMR PIETAISNSY 240 PDSFMKLPSL ESPNSTSSQN CYQPMIVDNE GSITNQMSGD PNSRLTNWAA LDRLVASQLN 300 GQTETSRQLA CFNDHSISMG YSNPSADHHH HDLQSPALRY NRSYNGTQDY NSEMDLWSLT 360 RSSSSSDPLC HVVNASV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-48 | 9 | 175 | 9 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00321 | DAP | Transfer from AT2G46770 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847221 | 1e-178 | KC847221.1 Gossypium hirsutum NAC domain protein NAC44 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017629605.1 | 0.0 | PREDICTED: NAC domain-containing protein 43 | ||||
Swissprot | Q84WP6 | 1e-141 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A1U8L2D3 | 0.0 | A0A1U8L2D3_GOSHI; NAC domain-containing protein 43 | ||||
STRING | Gorai.007G112500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM778 | 28 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 1e-132 | NAC family protein |