PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_15547_BGI-A2_v1.0
Common NameF383_31597
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 523aa    MW: 58126.4 Da    PI: 7.3838
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_15547_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.4e-152572148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g+WT+ Ed  l+++v+ +G g+W+++ r  g+ R++k+c++rw ++l
  Cotton_A_15547_BGI-A2_v1.0 25 KGPWTAAEDAVLAEYVRTHGEGNWNAVQRNTGLARCGKSCRLRWANHL 72
                                79******************************************9986 PP
2Myb_DNA-binding48.22.5e-1578121146
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                 +g++++eE+ ++v++++ +G++ W++ a++++ gRt++++k++w++
  Cotton_A_15547_BGI-A2_v1.0  78 KGAFSPEEERIIVELHAIMGNK-WARMAARLP-GRTDNEIKNYWNT 121
                                 799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.3382072IPR017930Myb domain
SuperFamilySSF466891.41E-2823119IPR009057Homeodomain-like
SMARTSM007174.6E-122474IPR001005SANT/Myb domain
PfamPF002498.1E-142572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-232679IPR009057Homeodomain-like
CDDcd001677.80E-102772No hitNo description
PROSITE profilePS5129424.8873127IPR017930Myb domain
SMARTSM007176.8E-1677125IPR001005SANT/Myb domain
PfamPF002494.1E-1478121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2480126IPR009057Homeodomain-like
CDDcd001672.68E-1180121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MMGNNNNNNH HQVSMQKEEG VMLKKGPWTA AEDAVLAEYV RTHGEGNWNA VQRNTGLARC  60
GKSCRLRWAN HLRPNLKKGA FSPEEERIIV ELHAIMGNKW ARMAARLPGR TDNEIKNYWN  120
TRVKRRQRQG LPLYPPEIQS LYSQTQPVLT PSSTSSFSFQ HSTTMLTSSS PSTPPRLLAY  180
DPHSAATPPP VQSPSPASTP PPLPSPSHVS PLQSPHKPSF SSIPLADSFT SNTPSSSLDF  240
YFPRPLPSLQ QPLRNKRPRH DENNTNNGGS SFMLPFSSLM KTDPFNPHTV TNNSLNPQHY  300
SNSYCLDQTT FDMASSSRFP QPHFDPGQFI STPRFGYNQL KTELPSNQIF TQVGNSQVRL  360
DPKGNNNYSS HNQIQNSNHH SSSLNISGNG LIEDMLQEVQ TLNEKNEIMA SQSCLVRSSS  420
SSEGLASGLE AKEESKEQIM NTAKHVDYSN VNPSSMAMAI PEWYINNGET SIGQSSTVTY  480
DNLALEFELH DQIASLLPID TAPDHHGRSS SSYTWDHSFP GIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30231265107B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6146031e-142JX614603.1 Gossypium hirsutum clone NBRI_GE58120 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017618899.10.0PREDICTED: transcription factor MYB28-like
TrEMBLA0A0B0MT600.0A0A0B0MT60_GOSAR; Transcription factor GAMYB
STRINGGorai.013G159200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.11e-69myb domain protein 101