PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_15493_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family FAR1
Protein Properties Length: 704aa    MW: 80858.5 Da    PI: 6.8529
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_15493_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR198.28.8e-3166161190
                        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwe 77 
                                 +fYn+YAk++GFs+r+++ ++sk+++ i++r+f+Cskeg+r++++++      ++k+rr r+ tr gCka ++v+k+++gkw+
  Cotton_A_15493_BGI-A2_v1.0  66 NFYNAYAKQTGFSIRVNSYYRSKKDNLIISREFCCSKEGFRRDKHSRktdsgdDTKRRRARPITREGCKALMTVRKRENGKWY 148
                                 6****************************************999988899**99999************************** PP

                        FAR1  78 vtkleleHnHela 90 
                                 v+kle++HnHel+
  Cotton_A_15493_BGI-A2_v1.0 149 VAKLEKNHNHELV 161
                                 ***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.8E-2866161IPR004330FAR1 DNA binding domain
PfamPF105514.1E-33282375IPR018289MULE transposase domain
PROSITE profilePS5096611.412564600IPR007527Zinc finger, SWIM-type
SMARTSM005755.2E-10575602IPR006564Zinc finger, PMZ-type
PfamPF044341.6E-9575599IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MAGSYVALED EGDGCCVVEE NENPMVLYDF RKEDEHLNLE FSQHVIGGVV EPTLDMEFIS  60
EDDARNFYNA YAKQTGFSIR VNSYYRSKKD NLIISREFCC SKEGFRRDKH SRKTDSGDDT  120
KRRRARPITR EGCKALMTVR KRENGKWYVA KLEKNHNHEL VTPAMRHFLR SYKEEDDPKK  180
SLNGTIGSMG VGLNASVNVS PEEYNSFGKL GFAAQNNVNF VRRGRLSNFG VDAQSLLAFV  240
KVMQTSDPAF YYAIQVDDDD RLSSVFWVDT RSRIAYNCFS DVISFDTTYQ VNQYKMPFAP  300
FIGVNHHRQS VLFGCALLAD ETESTFIWLF TTWLEAMSGC QPGLIMTDYD SAISRAVESV  360
FPKSRHRYCK RHILSKMPKE IGHVFSSLPK TFQVEFEKCI NNSETPEEFE SAWQLLLDKC  420
SLRGNEWLQS LYNDRKLWVS TYARDTFFAG MYSIQPSKSV SSLFDGYVNA GTTLQDLAEQ  480
YERALDGRYE KEVRAEFETF YTKPVLKTPL PMEKQAAEVY TRKLFLVFQD EIYESLLLAV  540
KSSLDDGLSK TFEVARFDEE HKVFRVGLNI ADQIASCSCK MFEFEGILCR HVIAVFRATN  600
IFLLPQHYIL KRWTKNAKEE AKFDILPSVE IHDNSRKGKK QYNLLYQEAI KCAEEGMASD  660
HSFNVALNAL REARIKIVSA KKNAINVQKL ETASSTHYTD DKTT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017628148.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_017628149.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0D2QNQ70.0A0A0D2QNQ7_GOSRA; Uncharacterized protein
STRINGGorai.007G081700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5