PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_15474_BGI-A2_v1.0

Common Name

F383_25252

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 318aa MW: 36113 Da PI: 8.0359

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_15474_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.7	3.6e-56	16	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppGfrFhPtdeel+++yL kkv ++ +++ +i evd++k+ePwdLp ++k +ekewyfF+ rd+ky+tg r+nrat++gyW Cotton_A_15474_BGI-A2_v1.0 16 LPPGFRFHPTDEELITHYLSKKVVDSFFSA-IAIGEVDLNKCEPWDLPWRAKMGEKEWYFFCVRDRKYPTGLRTNRATDAGYW 97 79***********************999.88***********888999************************* PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 katgkdke+++ +++lvg+kktLvfykgrapkg+kt+Wvmhe+rle Cotton_A_15474_BGI-A2_v1.0 98 KATGKDKEIFK-GKSLVGMKKTLVFYKGRAPKGQKTNWVMHEFRLE 142 *******.999**************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-62	12	166	IPR003441	NAC domain
PROSITE profile	PS51005	59.099	16	166	IPR003441	NAC domain
Pfam	PF02365	3.3E-29	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MENVSSFRNE DEQMELPPGF RFHPTDEELI THYLSKKVVD SFFSAIAIGE VDLNKCEPWD 60 LPWRAKMGEK EWYFFCVRDR KYPTGLRTNR ATDAGYWKAT GKDKEIFKGK SLVGMKKTLV 120 FYKGRAPKGQ KTNWVMHEFR LEGQYSVYNL PKTAKNEWVI CRVFQKSPNG KKVHISGLPP 180 LMDPSPHTSE ARTVVGAGET SNVTCFSDPI EDRKAVEEMM DSFDTSLVPC SSSSVNSLQK 240 ASYTTNQIKS NMGNLQYPDC FWIQEPSLLK TLIQSQGGRS KQNLKPEFSQ DSTVSNPEMI 300 QLPSCSAGAI DLGYFWGY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-54	13	172	17	174	NAC domain-containing protein 19
3swm_B	4e-54	13	172	17	174	NAC domain-containing protein 19
3swm_C	4e-54	13	172	17	174	NAC domain-containing protein 19
3swm_D	4e-54	13	172	17	174	NAC domain-containing protein 19
3swp_A	4e-54	13	172	17	174	NAC domain-containing protein 19
3swp_B	4e-54	13	172	17	174	NAC domain-containing protein 19
3swp_C	4e-54	13	172	17	174	NAC domain-containing protein 19
3swp_D	4e-54	13	172	17	174	NAC domain-containing protein 19
4dul_A	3e-54	13	172	14	171	NAC domain-containing protein 19
4dul_B	3e-54	13	172	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ914143	0.0	JQ914143.1 Gossypium hirsutum NAC domain protein 12 (NAC12) mRNA, complete cds.
GenBank	KJ507138	0.0	KJ507138.1 Gossypium hirsutum subsp. latifolium isolate L185 NAC12 L-protein (NAC12) mRNA, complete cds.
GenBank	KJ507139	0.0	KJ507139.1 Gossypium hirsutum subsp. latifolium isolate L123 NAC12 L-protein (NAC12) mRNA, complete cds.
GenBank	KJ507164	0.0	KJ507164.1 Gossypium hirsutum subsp. latifolium isolate L20 NAC12 L-protein (NAC12) mRNA, complete cds.
GenBank	KJ507169	0.0	KJ507169.1 Gossypium hirsutum isolate CCRI10 NAC12 L-protein (NAC12) mRNA, complete cds.
GenBank	KJ507173	0.0	KJ507173.1 Gossypium hirsutum isolate Han2490 NAC12 L-protein (NAC12) mRNA, complete cds.
GenBank	KJ507177	0.0	KJ507177.1 Gossypium hirsutum isolate Xiazao1 NAC12 L-protein (NAC12) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017627795.1	0.0	PREDICTED: NAC domain-containing protein 92-like
Swissprot	Q9FLJ2	1e-118	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A0B0P441	0.0	A0A0B0P441_GOSAR; NAC domain-containing protein
STRING	Gorai.007G079900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM400	28	174

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-118	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]