PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_15447_BGI-A2_v1.0
Common NameF383_18762
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 326aa    MW: 36682.4 Da    PI: 6.7403
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_15447_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.2e-13128179155
                                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 +r++h  +Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Cotton_A_15447_BGI-A2_v1.0 128 QRMTHITVERNRRKQMNQYLAALRSLMPPS---YVQRGDQASIIGGAIDFVKELE 179
                                 79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.19E-13126183No hitNo description
Gene3DG3DSA:4.10.280.103.8E-13126182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.14E-16127197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.193127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10128179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-9133184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MALEAVVYPQ DPFPYVFDDF STVGGGVGFD FCLQNEDKTL LGILQQPNHH DLHANWDSSS  60
TNSTMQHTKD QWDPYSSPET CTVDQSLPGP IRFPPLMETP APATTTTNSR RKRRRTRSSK  120
NKEELENQRM THITVERNRR KQMNQYLAAL RSLMPPSYVQ RGDQASIIGG AIDFVKELEQ  180
LLKSMEAHKR TTQQPQHDAY SSPFAEFFTF PQFSTRATQC NSNQQQHMAA ATATAESVAD  240
IEVTMVESHA NLKILSKKQP RQLLKLVAGL QGLRLVVQHL NVTTMNEMAL YSVSVKVEEG  300
CHLSTVDEIA AAVNQMLVRL LEETGF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110114RKRRR
2110115RKRRRT
3128139RMTHITVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017629933.10.0PREDICTED: transcription factor bHLH96-like
SwissprotQ9C7T42e-90BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0B0NT560.0A0A0B0NT56_GOSAR; Transcription factor bHLH96-like protein
STRINGGorai.005G094800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-86bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]