PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_15440_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 306aa MW: 33978.2 Da PI: 7.2198 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.3 | 1.1e-17 | 172 | 226 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k Cotton_A_15440_BGI-A2_v1.0 172 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 226 778899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 128.2 | 3.5e-41 | 172 | 261 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke Cotton_A_15440_BGI-A2_v1.0 172 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKE 254 69********************************************************************************* PP HD-ZIP_I/II 84 veeLreel 91 +eLr +l Cotton_A_15440_BGI-A2_v1.0 255 LQELR-AL 261 ****9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 6.4E-6 | 63 | 134 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 9.2E-18 | 155 | 222 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.5E-18 | 162 | 229 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.216 | 168 | 228 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.3E-16 | 170 | 232 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.7E-15 | 172 | 226 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.22E-16 | 172 | 229 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 203 | 226 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 7.2E-26 | 228 | 271 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 6.7E-11 | 228 | 262 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MELALSLGDP SKSFSFLDKT PKLSSKDLGF CMGLRLQEKV DAFEGEAATG DGDYKRVSSD 60 PPHQLDLLPF SPVPRVQPSS QLRFPWLTDN VMEMGSSDGR GRGLDVNRLA VVALGEEAEE 120 GAALSSPNSA ASSFQVDFGF TNGSSRGKRE VEMETERGSS RASDDDDNGS TRKKLRLSKE 180 QSAFLEESFK EHNTLNPKQK LALAKQLNLR PRQVEVWFQN RRARTKLKQT EVDCEYLKRC 240 CETLTEENRR LQKELQELRA LKASQPFYMQ LPATTLTMCP SCERVATTST TADGKNGLLP 300 LTKTSG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 170 | 176 | TRKKLRL |
2 | 220 | 228 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ908423 | 1e-149 | DQ908423.1 Gossypium hirsutum clone LIB5327-009-A1-N1-C5_P_S_Gh484 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017608734.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT14-like | ||||
Refseq | XP_017608735.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT14-like | ||||
Swissprot | P46665 | 1e-100 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | A0A1U8HZQ3 | 0.0 | A0A1U8HZQ3_GOSHI; homeobox-leucine zipper protein HAT14-like | ||||
STRING | Gorai.006G143600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4928 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 2e-82 | homeobox from Arabidopsis thaliana |