PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_15221_BGI-A2_v1.0 | ||||||||
Common Name | F383_27616 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 206aa MW: 23721.9 Da PI: 8.8038 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 88.1 | 1.3e-27 | 42 | 131 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklel 83 kfY eYA+++GF vr+ + ++s +g++ r++ C+k+g++ ++k + +e+++r++ r gCka++ vk+ek+gkw+vt++e+ Cotton_A_15221_BGI-A2_v1.0 42 KFYIEYARRIGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNHKGTLGQEKKPRPSAREGCKATILVKMEKTGKWVVTRFEK 124 6********************************************************************************** PP FAR1 84 eHnHela 90 eHnH+l+ Cotton_A_15221_BGI-A2_v1.0 125 EHNHPLM 131 *****96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.3E-26 | 42 | 131 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 206 aa Download sequence Send to blast |
DLDKEGGKAD SSVEEKTAEP EGSEILEPYV GMEFESEDDA KKFYIEYARR IGFVVRIMQR 60 RRSGIDGRTL ARRLGCNKQG FSPNHKGTLG QEKKPRPSAR EGCKATILVK MEKTGKWVVT 120 RFEKEHNHPL MITTNGFNTT GDKDKKIEEL TMELAHQEQL CSAYREKLFA FINNVEKQTE 180 ELSSKIEVIV DNVRKLEAQR QRFTHR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017624503.1 | 1e-152 | PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 | ||||
Swissprot | Q9SZL8 | 7e-24 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A0B0MT75 | 1e-151 | A0A0B0MT75_GOSAR; Far1-related sequence 5-like protein | ||||
STRING | Gorai.001G227800.1 | 1e-148 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3918 | 28 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G12850.1 | 6e-78 | FAR1 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|