PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_15185_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 221aa    MW: 24851.5 Da    PI: 10.8531
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_15185_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2378.5e-12109150351
                         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                                  +GV++  k+ +W A I++      +k+++lg+ g+ eeAa+++++a+ 
  Cotton_A_15185_BGI-A2_v1.0 109 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 150
                                 79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.3E-4108165IPR001471AP2/ERF domain
PfamPF008475.1E-6108151IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-8109153IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-6111155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MVSLRRRKLL GLCSGKNSVL TPLHRFFGNG NALETSSQNA KSVSVHPILL DSINHVHGKS  60
IPMVSCGSPN VSGSGSSKEH HNQPFPGQLI KRRKRHRRKH VQNQEPCLMR GVYFKNMKWQ  120
AAIKVDKKQI HLGTVGSQEE AARLYDRAAF MCGREPNFEL SEEEKQELRN FKWDEFLAYT  180
RHSITNKKSK RRLGIRPQKS SEPAIENGSG TAICIATPGV V
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017608724.11e-154PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_017608806.11e-154PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
SwissprotQ56XP92e-43ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A2P5XCD81e-151A0A2P5XCD8_GOSBA; Uncharacterized protein
STRINGGorai.001G231300.11e-139(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61892646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.12e-49ERF family protein