PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_15056_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 440aa    MW: 46973.8 Da    PI: 4.5531
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_15056_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY48.32e-152402782259
                                 EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY  22 rsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                 ++YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Cotton_A_15056_BGI-A2_v1.0 240 KGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 278
                                 68*****998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.12E-14230280IPR003657WRKY domain
SMARTSM007748.6E-17232279IPR003657WRKY domain
PfamPF031064.4E-13240278IPR003657WRKY domain
PROSITE profilePS5081119.531240280IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.8E-15240280IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MDNYQGEGDL NDIVRASGGG PLSCATGHGS NTVPASSWQQ FPSDPLNFPS SAMEDHGLNA  60
FGDPFSAMRD PLLHELDVAA GCSAYFSSPN STDHIINTTS SATVEADTCN FSGSSTMVGQ  120
GKLFEEDMPS PCNIFSRIQI SASSSKLPVS PCDSPMIAAC VSPRGIKAPA VLPSDMINAN  180
TSKSCLIDST GPLQISSPRN LGIKRRKSQV KKVVCIPAPA AANSRSSGEV VPSDLWAWRK  240
GYYRCSSSKG CSARKQVERS RTDPNMLVIT YTSEHNHPWP TQRNALAGST RSQPSKNNNN  300
AAAASKITSP RSQTQNAVSP KEEDLKESSN DALSPTVAAV NSTASASAKG ESEDMEKQLE  360
IDDAEFGEGI PETYRPALMA GDSQQPEDFF AELDEIETDP LNLLFPQGFG GGDQDEQKEK  420
KTMDPFGLFD WPPGNNDASF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-16207281280Disease resistance protein RRS1
5w3x_D1e-16207281280Disease resistance protein RRS1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697910.0KF669791.1 Gossypium hirsutum WRKY transcription factor 72 (WRKY72) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017602886.10.0PREDICTED: probable WRKY transcription factor 35 isoform X2
TrEMBLA0A2P5XWD40.0A0A2P5XWD4_GOSBA; Uncharacterized protein
STRINGGorai.009G116800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30852865
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.12e-90WRKY DNA-binding protein 35