PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_15048_BGI-A2_v1.0 | ||||||||
Common Name | F383_22743 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LSD | ||||||||
Protein Properties | Length: 173aa MW: 18258.3 Da PI: 8.1291 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 40 | 6.3e-13 | 11 | 35 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+ Cr++L YPrGA++V+CalC+t+ Cotton_A_15048_BGI-A2_v1.0 11 CSRCRNILLYPRGATNVCCALCNTI 35 9**********************97 PP | |||||||
2 | zf-LSD1 | 42.8 | 8.4e-14 | 50 | 74 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+ GA+sVRC++C+ + Cotton_A_15048_BGI-A2_v1.0 50 CGGCRTLLMYTCGATSVRCSCCNII 74 **********************976 PP | |||||||
3 | zf-LSD1 | 44.7 | 2.2e-14 | 88 | 112 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GA sV+Ca+C+ V Cotton_A_15048_BGI-A2_v1.0 88 CGHCRTTLMYPYGAASVKCAVCHYV 112 **********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 3.5E-12 | 9 | 38 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.8E-11 | 11 | 35 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.7E-14 | 47 | 77 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.2E-11 | 50 | 73 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.3E-12 | 85 | 115 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.4E-13 | 88 | 112 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MIADMQSEVV CSRCRNILLY PRGATNVCCA LCNTITQVPP PGMEMAQLVC GGCRTLLMYT 60 CGATSVRCSC CNIINHVTAS NPMAHINCGH CRTTLMYPYG AASVKCAVCH YVTNVGVSTG 120 NVRCPLPASS LNARGTMPST STSQTVVVEN PMSVDESGKL VSNVVVGITT DKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of reactive oxygen-induced cell death, cold stress-induced cell death, pathogen-induced hypersensitive response (HR), basal disease resistance. May be involved in the induction of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. Antagonizes the function of BZIP10, a positive regulator of cell death, by interacting in the cytoplasm and preventing its nuclear localization. Controls lysigenous aerenchyma in hypocotyls under root hypoxia. Required for leaf acclimation in response to excess excitation energy. {ECO:0000269|PubMed:10550898, ECO:0000269|PubMed:11595797, ECO:0000269|PubMed:11844114, ECO:0000269|PubMed:12732715, ECO:0000269|PubMed:15347794, ECO:0000269|PubMed:16957775, ECO:0000269|PubMed:18055613, ECO:0000269|PubMed:18790826, ECO:0000269|PubMed:20456049, ECO:0000269|PubMed:21097903}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By methyl viologen. {ECO:0000269|PubMed:20456049}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016730172.1 | 1e-116 | PREDICTED: protein LSD1-like | ||||
Refseq | XP_016730173.1 | 1e-116 | PREDICTED: protein LSD1-like | ||||
Refseq | XP_017603108.1 | 1e-116 | PREDICTED: protein LSD1-like isoform X1 | ||||
Refseq | XP_017603109.1 | 1e-116 | PREDICTED: protein LSD1-like isoform X1 | ||||
Swissprot | P94077 | 1e-65 | LSD1_ARATH; Protein LSD1 | ||||
TrEMBL | A0A0B0NU08 | 1e-114 | A0A0B0NU08_GOSAR; Protein LOL3 | ||||
TrEMBL | A0A1U8MXC5 | 1e-114 | A0A1U8MXC5_GOSHI; protein LSD1-like | ||||
TrEMBL | A0A2P5VX73 | 1e-114 | A0A2P5VX73_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.009G116000.1 | 1e-115 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5345 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 5e-68 | LSD family protein |
Publications ? help Back to Top | |||
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